Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   LO004_RS02385 Genome accession   NZ_CP087331
Coordinates   498083..498823 (+) Length   246 a.a.
NCBI ID   WP_000076105.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain LMG994     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 493083..503823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO004_RS02370 ponA 493670..496225 (-) 2556 WP_000736680.1 penicillin-binding protein PBP1a -
  LO004_RS02375 pilM 496387..497445 (+) 1059 WP_031950501.1 pilus assembly protein PilM Machinery gene
  LO004_RS02380 pilN 497445..498086 (+) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  LO004_RS02385 pilO 498083..498823 (+) 741 WP_000076105.1 type 4a pilus biogenesis protein PilO Machinery gene
  LO004_RS02390 pilP 498834..499361 (+) 528 WP_000695068.1 pilus assembly protein PilP Machinery gene
  LO004_RS02395 pilQ 499424..501589 (+) 2166 WP_001017035.1 type IV pilus secretin PilQ family protein Machinery gene
  LO004_RS02400 aroK 501601..502170 (+) 570 WP_000643712.1 shikimate kinase AroK -
  LO004_RS02405 aroB 502199..503281 (+) 1083 WP_001193995.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27847.64 Da        Isoelectric Point: 4.8357

>NTDB_id=628818 LO004_RS02385 WP_000076105.1 498083..498823(+) (pilO) [Acinetobacter baumannii strain LMG994]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQVIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=628818 LO004_RS02385 WP_000076105.1 498083..498823(+) (pilO) [Acinetobacter baumannii strain LMG994]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGTTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAAAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.593

100

0.996
  comO Acinetobacter baylyi ADP1

69.136

98.78

0.683