Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AA2Tth_RS09730 Genome accession   NZ_AP019792
Coordinates   1794372..1795556 (-) Length   394 a.a.
NCBI ID   WP_143586691.1    Uniprot ID   -
Organism   Thermus thermophilus strain AA2-20     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1789372..1800556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA2Tth_RS09705 (TthAA220_19000) fabZ 1789597..1790025 (-) 429 WP_011173839.1 3-hydroxyacyl-ACP dehydratase FabZ -
  AA2Tth_RS09710 (TthAA220_19010) - 1790032..1791069 (-) 1038 WP_011173840.1 rod shape-determining protein -
  AA2Tth_RS09715 (TthAA220_19020) rny 1791081..1792805 (-) 1725 WP_014630294.1 ribonuclease Y -
  AA2Tth_RS09720 (TthAA220_19030) recA 1792806..1793828 (-) 1023 WP_143586689.1 recombinase RecA Machinery gene
  AA2Tth_RS09725 (TthAA220_19040) thpR 1793779..1794375 (-) 597 WP_011173843.1 RNA 2',3'-cyclic phosphodiesterase -
  AA2Tth_RS09730 (TthAA220_19050) cinA 1794372..1795556 (-) 1185 WP_143586691.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  AA2Tth_RS09735 (TthAA220_19060) - 1795529..1796305 (-) 777 WP_172619213.1 glycine cleavage system protein T -
  AA2Tth_RS09740 (TthAA220_19070) - 1796345..1797394 (+) 1050 WP_143586693.1 MFS transporter -
  AA2Tth_RS09745 (TthAA220_19080) - 1797387..1798013 (+) 627 WP_143586695.1 HAD family phosphatase -
  AA2Tth_RS09750 (TthAA220_19090) - 1797999..1799084 (-) 1086 WP_172619214.1 enolase C-terminal domain-like protein -
  AA2Tth_RS09755 (TthAA220_19100) - 1799134..1799844 (-) 711 WP_143586699.1 hypothetical protein -
  AA2Tth_RS09760 (TthAA220_19110) - 1799877..1800374 (+) 498 WP_143586701.1 bioflim formation protein -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 42862.36 Da        Isoelectric Point: 7.0210

>NTDB_id=62812 AA2Tth_RS09730 WP_143586691.1 1794372..1795556(-) (cinA) [Thermus thermophilus strain AA2-20]
MERAEILGVGTELLYGETLDTNTAEIARSLKPYALKVERTLRVADEVAPLAREVEEAFARARLVVLSGGLGPTPDDVTRE
AVALALGEPLELDEAVLGEIEAFFRARGRAMPEANRKQAMRIPSATWLKNPRGTAPGWWVRKGGKDLVLLPGPPPEWRPM
WQEVLPRLGLPRRPYAERVLKTWGIGESEIVERLGPLFVRGEEVEVGTYPKVHGVEVVVRGREDRVAELAERIKKKLLKE
VWGEGEMTLAEAVKRRMEREGATLSTMESLTGGLLGAEITRVPGASCFYLGGVVSYSVGAKARFGVPQDLLSRTVSAETA
RAMAEAARSLFGSTYALATTGVAGPDPLEGEPPGTVYVALAGPTGAEVRRYRFPGDRETVRLRSVYAALALLVT

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=62812 AA2Tth_RS09730 WP_143586691.1 1794372..1795556(-) (cinA) [Thermus thermophilus strain AA2-20]
ATGGAGCGGGCAGAGATCCTCGGGGTAGGTACCGAGCTTCTCTACGGGGAGACCCTGGACACCAACACGGCGGAGATCGC
AAGAAGCCTCAAGCCCTACGCCCTCAAGGTGGAAAGGACCCTGAGGGTGGCGGACGAGGTGGCGCCCCTGGCCCGGGAGG
TGGAGGAGGCCTTCGCCCGGGCCAGGCTTGTGGTCCTCTCCGGCGGCCTCGGCCCCACCCCGGACGACGTGACCCGGGAG
GCGGTGGCCCTGGCCTTGGGGGAGCCTTTGGAGCTGGACGAGGCCGTGCTTGGGGAGATTGAGGCCTTCTTCCGTGCCCG
GGGGCGCGCCATGCCCGAGGCCAACCGCAAGCAGGCCATGCGGATCCCCTCCGCCACCTGGCTCAAAAACCCCCGGGGCA
CCGCCCCCGGGTGGTGGGTGCGCAAAGGGGGCAAGGACCTGGTCCTCCTCCCCGGGCCCCCTCCCGAGTGGCGCCCTATG
TGGCAGGAGGTCCTGCCCCGCCTGGGCCTGCCGCGAAGGCCCTACGCCGAAAGGGTCTTGAAAACCTGGGGCATCGGGGA
GTCGGAGATCGTGGAGCGGCTTGGCCCCCTCTTCGTCCGGGGGGAGGAGGTGGAGGTGGGCACCTACCCCAAGGTCCACG
GGGTGGAGGTGGTGGTCCGGGGCCGGGAGGACCGGGTGGCGGAGCTCGCCGAGCGGATCAAGAAAAAGCTTCTTAAGGAG
GTCTGGGGCGAGGGGGAGATGACCCTCGCCGAGGCGGTGAAAAGGCGCATGGAGCGGGAGGGGGCCACCCTTTCCACCAT
GGAGAGCCTCACCGGGGGGCTTCTGGGGGCGGAGATCACCCGCGTGCCGGGGGCGAGCTGCTTCTACTTGGGGGGCGTGG
TATCCTACTCCGTAGGGGCCAAGGCCCGCTTCGGGGTGCCTCAGGACCTCCTCTCCCGGACGGTCTCCGCCGAGACCGCC
CGGGCCATGGCGGAGGCGGCGCGGTCCCTCTTCGGGTCCACCTACGCCCTGGCCACCACCGGGGTCGCGGGGCCGGACCC
CCTGGAGGGAGAGCCCCCGGGCACGGTCTACGTGGCCCTGGCGGGCCCCACGGGCGCGGAGGTGCGGCGCTACCGCTTCC
CGGGAGACCGGGAGACCGTGCGCTTAAGAAGCGTCTACGCGGCCTTGGCGCTCCTTGTGACATGA

Domains

Predicted by InterProScan.

Competence-damaged protein (CinA)

(248-392)

Damage-inducible protein CinA KH domain (CinA_KH)

(177-234)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

35.109

100

0.368
  cinA Streptococcus mitis NCTC 12261

35.109

100

0.368
  cinA Streptococcus pneumoniae TIGR4

34.867

100

0.365
  cinA Streptococcus pneumoniae R36A

34.867

100

0.365
  cinA Streptococcus pneumoniae Rx1

34.867

100

0.365
  cinA Streptococcus pneumoniae R6

34.867

100

0.365
  cinA Streptococcus pneumoniae D39

34.625

100

0.363