Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY35_RS20025 Genome accession   NZ_CP087184
Coordinates   4674123..4674758 (-) Length   211 a.a.
NCBI ID   WP_258633689.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-028     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4669123..4679758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY35_RS19990 (LOY35_19955) - 4669505..4669975 (-) 471 WP_055127035.1 (2Fe-2S)-binding protein -
  LOY35_RS19995 (LOY35_19960) murB 4670239..4671258 (-) 1020 WP_258626071.1 UDP-N-acetylmuramate dehydrogenase -
  LOY35_RS20000 (LOY35_19965) - 4671255..4671719 (-) 465 WP_258626073.1 low molecular weight protein-tyrosine-phosphatase -
  LOY35_RS20005 (LOY35_19970) kdsB 4671719..4672483 (-) 765 WP_258626081.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY35_RS20010 (LOY35_19975) - 4672480..4672665 (-) 186 WP_003179363.1 Trm112 family protein -
  LOY35_RS20015 (LOY35_19980) lpxK 4672689..4673698 (-) 1010 Protein_3962 tetraacyldisaccharide 4'-kinase -
  LOY35_RS20020 (LOY35_19985) - 4673698..4674126 (-) 429 WP_258626083.1 biopolymer transporter ExbD -
  LOY35_RS20025 (LOY35_19990) exbB 4674123..4674758 (-) 636 WP_258633689.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY35_RS20030 (LOY35_19995) comA 4674866..4677100 (-) 2235 WP_258626084.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY35_RS20035 (LOY35_20000) - 4677245..4677760 (+) 516 WP_258626086.1 DUF2062 domain-containing protein -
  LOY35_RS20040 (LOY35_20005) - 4677958..4678737 (-) 780 WP_258626088.1 ABC transporter permease -
  LOY35_RS20045 (LOY35_20010) - 4678734..4679666 (-) 933 WP_258626089.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22766.83 Da        Isoelectric Point: 8.0840

>NTDB_id=627552 LOY35_RS20025 WP_258633689.1 4674123..4674758(-) (exbB) [Pseudomonas sp. B21-028]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGAGVSTNASALAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGSKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=627552 LOY35_RS20025 WP_258633689.1 4674123..4674758(-) (exbB) [Pseudomonas sp. B21-028]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGCCGCGTGACGCCGGAGCATTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAACTGAACAAGGACAAGCTCAAGGAGCTTCGGGCCAGTTCGCCGTTGGGCGAGATCCTGGCGGCCGGCCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCGGCCCGGGTCATCCATGAGCTGGAGCGCTACAT
CAATGCCCTTGGTACCATCGCTGCCATGGCCCCGTTGCTGGGCCTGCTGGGTACGGTGCTGGGCATGATCGACATTTTCA
GCGCCTTTACCGGGGCCGGCGTGAGCACCAATGCCTCGGCGCTGGCCGGTGGTATCTCCAAGGCCCTGATCACCACCGCC
GCGGGCCTGATGGTGGGTATCCCGTCGGTGTTCTTCCATCGGTTCTTGCAGCGCCGCGTCGACGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCCATCAAACTGGTCGAGGTGGTGCAGGGCGATCGTGACGTGGACCTGGCCGGGAGCAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.762

99.526

0.844