Detailed information
Bioinformatically predicted
Overview
| Name | pilQ | Type | Machinery gene |
| Locus tag | LOY54_RS01400 | Genome accession | NZ_CP087180 |
| Coordinates | 313619..314860 (+) | Length | 413 a.a. |
| NCBI ID | WP_258608917.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. B21-032 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 308619..319860
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOY54_RS01385 (LOY54_01385) | - | 309068..311521 (-) | 2454 | WP_258610678.1 | penicillin-binding protein 1A | - |
| LOY54_RS01390 (LOY54_01390) | pilM | 311658..312743 (+) | 1086 | WP_258608913.1 | pilus assembly protein PilM | - |
| LOY54_RS01395 (LOY54_01395) | - | 312740..313594 (+) | 855 | WP_258608915.1 | pilus assembly protein PilP | - |
| LOY54_RS01400 (LOY54_01400) | pilQ | 313619..314860 (+) | 1242 | WP_258608917.1 | type IV pilus secretin PilQ | Machinery gene |
| LOY54_RS01405 (LOY54_01405) | aroK | 314865..315383 (+) | 519 | WP_010222231.1 | shikimate kinase AroK | - |
| LOY54_RS01410 (LOY54_01410) | aroB | 315483..316580 (+) | 1098 | WP_010222232.1 | 3-dehydroquinate synthase | - |
| LOY54_RS01415 (LOY54_01415) | - | 316597..318192 (+) | 1596 | WP_123564817.1 | SPOR domain-containing protein | - |
Sequence
Protein
Download Length: 413 a.a. Molecular weight: 44452.76 Da Isoelectric Point: 5.3465
>NTDB_id=627448 LOY54_RS01400 WP_258608917.1 313619..314860(+) (pilQ) [Pseudomonas sp. B21-032]
MGKGAVVAALIGCCLSAGAFAGKQQYGGEPLSLNFQDVEVRTVLQVLADFSGVNLVASDAVQGKVTLRLQDVPWDQALEL
VLRSKGLEQRKDGNVLLVAPLAELAGSAPSRRELIPIHHARATDIAELFHSLMAHEAGGASHGSLSVDERTNTLVASQSP
ERLEELRRLIGELDVPVRQVMIEARIVEANVDFEKSLGVRWGGQVQLGKGLSLGGGDTFVDLGADRASSSIGFGLVRNSA
LLDLELSAMERTGNGEIISQPKVVTADKETARILKGTEVPYQETSGSGATSVTFREASLSLEVTPQITPDNRVIMVVKVT
KDEPDYLNALDHVPAIRKNEVNAKVRINDGETIVIGGVYSTVQSKVVDKVPFFGDVPYVGRLFRRDVLQEKKSELLVFLT
PRIMSDQAIAVSR
MGKGAVVAALIGCCLSAGAFAGKQQYGGEPLSLNFQDVEVRTVLQVLADFSGVNLVASDAVQGKVTLRLQDVPWDQALEL
VLRSKGLEQRKDGNVLLVAPLAELAGSAPSRRELIPIHHARATDIAELFHSLMAHEAGGASHGSLSVDERTNTLVASQSP
ERLEELRRLIGELDVPVRQVMIEARIVEANVDFEKSLGVRWGGQVQLGKGLSLGGGDTFVDLGADRASSSIGFGLVRNSA
LLDLELSAMERTGNGEIISQPKVVTADKETARILKGTEVPYQETSGSGATSVTFREASLSLEVTPQITPDNRVIMVVKVT
KDEPDYLNALDHVPAIRKNEVNAKVRINDGETIVIGGVYSTVQSKVVDKVPFFGDVPYVGRLFRRDVLQEKKSELLVFLT
PRIMSDQAIAVSR
Nucleotide
Download Length: 1242 bp
>NTDB_id=627448 LOY54_RS01400 WP_258608917.1 313619..314860(+) (pilQ) [Pseudomonas sp. B21-032]
ATGGGCAAGGGGGCTGTGGTTGCGGCGCTGATAGGCTGTTGCCTGTCTGCCGGCGCGTTTGCGGGCAAGCAACAGTACGG
CGGTGAGCCGTTGTCATTGAATTTTCAGGATGTCGAGGTGCGTACGGTGCTGCAGGTGCTGGCTGATTTTTCCGGGGTCA
ACCTGGTGGCCAGTGATGCGGTGCAGGGCAAGGTGACCTTGCGCTTGCAGGATGTGCCCTGGGACCAGGCGCTGGAGCTG
GTGCTGCGCAGCAAGGGCCTGGAGCAGCGCAAGGATGGCAATGTATTGCTGGTCGCACCGCTTGCCGAACTGGCCGGGTC
CGCGCCGTCGCGGCGCGAGCTGATACCGATCCACCACGCCAGGGCCACCGATATCGCCGAGCTTTTCCACAGCCTGATGG
CCCATGAGGCCGGCGGCGCCAGCCATGGTTCGCTGAGTGTCGATGAGCGCACCAACACCCTGGTCGCCAGCCAGTCGCCG
GAACGTCTGGAAGAGCTGCGCAGGTTGATCGGCGAACTCGATGTGCCGGTACGCCAGGTCATGATCGAGGCGCGGATCGT
CGAGGCCAACGTCGATTTTGAAAAGAGCCTGGGTGTGCGCTGGGGTGGCCAGGTGCAGTTGGGCAAGGGCTTGAGCCTGG
GTGGTGGCGATACCTTCGTCGACCTTGGCGCGGACCGGGCATCGTCGAGTATCGGCTTTGGCCTGGTGCGCAACAGTGCG
CTGCTCGACCTGGAACTGAGCGCCATGGAGCGCACCGGCAACGGCGAAATCATTTCCCAGCCCAAGGTCGTCACCGCTGA
CAAGGAAACTGCGCGGATCCTCAAGGGCACCGAGGTGCCGTATCAGGAAACCAGCGGCAGCGGCGCTACCTCGGTGACCT
TCCGCGAGGCCTCGCTGTCCCTTGAGGTCACCCCGCAGATCACCCCGGACAACCGGGTAATCATGGTGGTCAAGGTGACC
AAGGACGAGCCCGACTACCTCAACGCCCTGGATCACGTGCCGGCGATCCGTAAAAACGAGGTCAACGCCAAGGTGCGTAT
CAATGATGGCGAGACCATCGTCATCGGCGGCGTGTACTCGACGGTGCAAAGTAAAGTTGTCGACAAGGTGCCATTTTTCG
GCGATGTGCCGTATGTTGGGCGGCTGTTTCGTCGCGATGTTCTACAAGAGAAAAAATCCGAGCTGCTGGTCTTCCTGACT
CCGCGTATCATGAGTGACCAGGCGATTGCTGTGAGTCGTTGA
ATGGGCAAGGGGGCTGTGGTTGCGGCGCTGATAGGCTGTTGCCTGTCTGCCGGCGCGTTTGCGGGCAAGCAACAGTACGG
CGGTGAGCCGTTGTCATTGAATTTTCAGGATGTCGAGGTGCGTACGGTGCTGCAGGTGCTGGCTGATTTTTCCGGGGTCA
ACCTGGTGGCCAGTGATGCGGTGCAGGGCAAGGTGACCTTGCGCTTGCAGGATGTGCCCTGGGACCAGGCGCTGGAGCTG
GTGCTGCGCAGCAAGGGCCTGGAGCAGCGCAAGGATGGCAATGTATTGCTGGTCGCACCGCTTGCCGAACTGGCCGGGTC
CGCGCCGTCGCGGCGCGAGCTGATACCGATCCACCACGCCAGGGCCACCGATATCGCCGAGCTTTTCCACAGCCTGATGG
CCCATGAGGCCGGCGGCGCCAGCCATGGTTCGCTGAGTGTCGATGAGCGCACCAACACCCTGGTCGCCAGCCAGTCGCCG
GAACGTCTGGAAGAGCTGCGCAGGTTGATCGGCGAACTCGATGTGCCGGTACGCCAGGTCATGATCGAGGCGCGGATCGT
CGAGGCCAACGTCGATTTTGAAAAGAGCCTGGGTGTGCGCTGGGGTGGCCAGGTGCAGTTGGGCAAGGGCTTGAGCCTGG
GTGGTGGCGATACCTTCGTCGACCTTGGCGCGGACCGGGCATCGTCGAGTATCGGCTTTGGCCTGGTGCGCAACAGTGCG
CTGCTCGACCTGGAACTGAGCGCCATGGAGCGCACCGGCAACGGCGAAATCATTTCCCAGCCCAAGGTCGTCACCGCTGA
CAAGGAAACTGCGCGGATCCTCAAGGGCACCGAGGTGCCGTATCAGGAAACCAGCGGCAGCGGCGCTACCTCGGTGACCT
TCCGCGAGGCCTCGCTGTCCCTTGAGGTCACCCCGCAGATCACCCCGGACAACCGGGTAATCATGGTGGTCAAGGTGACC
AAGGACGAGCCCGACTACCTCAACGCCCTGGATCACGTGCCGGCGATCCGTAAAAACGAGGTCAACGCCAAGGTGCGTAT
CAATGATGGCGAGACCATCGTCATCGGCGGCGTGTACTCGACGGTGCAAAGTAAAGTTGTCGACAAGGTGCCATTTTTCG
GCGATGTGCCGTATGTTGGGCGGCTGTTTCGTCGCGATGTTCTACAAGAGAAAAAATCCGAGCTGCTGGTCTTCCTGACT
CCGCGTATCATGAGTGACCAGGCGATTGCTGTGAGTCGTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilQ | Pseudomonas aeruginosa PAK |
59.633 |
100 |
0.63 |
| pilQ | Acinetobacter baumannii D1279779 |
40.523 |
100 |
0.45 |
| pilQ | Acinetobacter baumannii strain A118 |
40.523 |
100 |
0.45 |
| comQ | Acinetobacter baylyi ADP1 |
41.425 |
100 |
0.45 |
| pilQ | Legionella pneumophila strain Lp02 |
42.043 |
100 |
0.429 |
| pilQ | Legionella pneumophila strain ERS1305867 |
42.043 |
100 |
0.429 |
| pilQ | Vibrio cholerae O1 biovar El Tor strain E7946 |
41.647 |
100 |
0.429 |
| pilQ | Vibrio cholerae strain A1552 |
41.647 |
100 |
0.429 |
| pilQ | Vibrio campbellii strain DS40M4 |
41.371 |
100 |
0.424 |
| pilQ | Neisseria meningitidis MC58 |
37.011 |
100 |
0.39 |
| pilQ | Neisseria gonorrhoeae strain FA1090 |
36.916 |
100 |
0.383 |
| pilQ | Neisseria meningitidis M1080 |
36.449 |
100 |
0.378 |