Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   NDR95_RS24790 Genome accession   NZ_CP104170
Coordinates   5308477..5309001 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain HW001G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5303477..5314001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDR95_RS24775 (NDR95_24775) aroB 5304593..5305699 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  NDR95_RS24780 (NDR95_24780) aroK 5305749..5306267 (-) 519 WP_003095833.1 shikimate kinase AroK -
  NDR95_RS24785 (NDR95_24785) pilQ 5306279..5308423 (-) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  NDR95_RS24790 (NDR95_24790) comL/pilP 5308477..5309001 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  NDR95_RS24795 (NDR95_24795) pilO 5308998..5309621 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  NDR95_RS24800 (NDR95_24800) pilN 5309618..5310214 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  NDR95_RS24805 (NDR95_24805) pilM 5310214..5311278 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  NDR95_RS24810 (NDR95_24810) - 5311463..5313934 (+) 2472 WP_016562439.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=627445 NDR95_RS24790 WP_003095836.1 5308477..5309001(-) (comL/pilP) [Pseudomonas aeruginosa strain HW001G]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=627445 NDR95_RS24790 WP_003095836.1 5308477..5309001(-) (comL/pilP) [Pseudomonas aeruginosa strain HW001G]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362