Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LN139_RS19850 Genome accession   NZ_CP087138
Coordinates   4211752..4213872 (-) Length   706 a.a.
NCBI ID   WP_236355831.1    Uniprot ID   -
Organism   Pseudomonas sp. KNUC1026     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4206752..4218872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LN139_RS19835 (LN139_19835) - 4208457..4210061 (-) 1605 WP_236355829.1 AAA family ATPase -
  LN139_RS19840 (LN139_19840) aroB 4210069..4211175 (-) 1107 WP_236355830.1 3-dehydroquinate synthase -
  LN139_RS19845 (LN139_19845) aroK 4211230..4211747 (-) 518 Protein_3931 shikimate kinase AroK -
  LN139_RS19850 (LN139_19850) pilQ 4211752..4213872 (-) 2121 WP_236355831.1 type IV pilus secretin PilQ family protein Machinery gene
  LN139_RS19855 (LN139_19855) - 4213907..4214428 (-) 522 WP_236360530.1 pilus assembly protein PilP -
  LN139_RS19860 (LN139_19860) pilO 4214428..4215090 (-) 663 WP_236355832.1 type 4a pilus biogenesis protein PilO -
  LN139_RS19865 (LN139_19865) - 4215087..4215656 (-) 570 WP_236355833.1 PilN domain-containing protein -
  LN139_RS19870 (LN139_19870) - 4215656..4216719 (-) 1064 Protein_3936 pilus assembly protein PilM -

Sequence

Protein


Download         Length: 706 a.a.        Molecular weight: 75388.37 Da        Isoelectric Point: 5.1663

>NTDB_id=626914 LN139_RS19850 WP_236355831.1 4211752..4213872(-) (pilQ) [Pseudomonas sp. KNUC1026]
MKRIISALGVSLGMALLSPALLAASLKAIDVANLPGNRMELKLSFDSPVPAPRGYTTDQPARIALDLPGVTNRLASSGRD
LGSGNARSLVVVEAQNRTRLIVSLNTLVPYSTRAEGNNVYVLIGEGASALQAANRSPANVPPPVASARAAAAAQAPVGKA
IRNIDFQRGELGEGNVVIDLSEQGVAPDIKEVGGKIMLTFAKTQLPDPLRVRLDVKDFATPVQYVSSSMAGDSAAISIEP
AGTYDYSAYQTDNRLTISVRPLTNEDLAKRNADKNIYTGDKLSLNFQDIDVRSVLQLIADFTNLNLVASDTVQGNITLRL
QNVPWDQALDLVLKTKGLDKRKVGNVLLVAPADEIAARERQELESQRQIQQLAPLRRDLIQVNYAKASDIAKLFQSVTGT
SGRNGQAGSNADSGSDNRGSITVDDRTNSIIAYQTQESLDELRRIVAQLDIPVRQVMIEARIVEATVDYDKQLGVRWGGT
SRGHGNTSVGGLNALGDIDGKTGTAAGSNVPFVDLGAAGATSGIGIGFVTNNTLIDLELSAMEKTGNGEVVSQPKVITSD
KETAKILKGTEVPYQEASSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNEVLGVPPINKNEVNSKVLI
NDGETIVIGGVFSNSQNKTVDKVPFLGDVPYVGRLFRRDVVSETKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 2121 bp        

>NTDB_id=626914 LN139_RS19850 WP_236355831.1 4211752..4213872(-) (pilQ) [Pseudomonas sp. KNUC1026]
ATGAAGAGAATTATTAGCGCGCTGGGCGTTTCGCTAGGGATGGCATTGCTGTCGCCGGCGCTGCTGGCTGCCAGCCTCAA
GGCTATCGATGTTGCGAATCTGCCCGGCAATCGCATGGAGCTCAAGCTCTCGTTCGACAGCCCGGTGCCCGCCCCGCGCG
GCTATACCACCGACCAGCCCGCACGCATCGCGTTGGACCTGCCCGGCGTTACCAATCGCCTGGCCAGCAGTGGCCGCGAC
CTGGGTTCGGGCAACGCACGCAGCCTGGTAGTGGTAGAGGCGCAAAACCGTACGCGGCTCATCGTCAGCCTCAATACTCT
GGTGCCCTACAGCACCCGTGCTGAAGGCAACAATGTCTACGTACTGATCGGTGAGGGTGCAAGCGCCCTGCAAGCGGCCA
ATCGCTCCCCTGCCAATGTGCCGCCGCCGGTCGCCAGCGCCCGAGCTGCCGCCGCAGCGCAGGCGCCAGTGGGCAAGGCC
ATCCGCAACATCGACTTCCAGCGCGGTGAGCTGGGTGAAGGCAATGTAGTGATCGACCTCAGCGAGCAAGGTGTGGCCCC
GGATATCAAGGAGGTCGGCGGCAAGATCATGCTGACCTTCGCCAAAACGCAATTGCCCGACCCGTTACGCGTACGCCTGG
ACGTGAAAGACTTTGCCACGCCGGTGCAGTACGTCAGCTCCAGCATGGCCGGCGACTCCGCCGCTATCAGCATCGAACCT
GCCGGCACTTACGATTACTCGGCCTATCAGACCGACAACCGGCTGACCATCAGCGTGCGCCCGTTGACCAACGAAGACCT
GGCCAAGCGCAACGCGGACAAGAACATCTACACCGGCGACAAGCTGTCGCTTAATTTCCAGGACATCGATGTGCGCTCGG
TGCTGCAACTGATCGCAGACTTCACCAACCTGAACCTGGTCGCCAGCGACACGGTGCAGGGCAACATCACACTGCGCTTG
CAGAACGTGCCATGGGACCAGGCATTGGACCTGGTGCTCAAGACCAAGGGCCTGGACAAGCGCAAGGTCGGCAATGTGCT
GTTGGTTGCGCCGGCTGACGAGATCGCTGCGCGTGAACGCCAGGAACTGGAGTCGCAACGGCAGATCCAGCAATTGGCGC
CGCTGCGCCGCGACCTGATCCAGGTGAACTACGCCAAGGCTTCCGACATTGCCAAGCTGTTCCAGTCGGTCACAGGCACC
AGTGGGCGTAACGGCCAGGCCGGTAGCAATGCCGACAGTGGCAGCGACAATCGTGGCTCGATCACCGTCGACGACCGTAC
CAACAGCATCATTGCCTATCAGACCCAGGAAAGCCTGGACGAGCTTCGCCGCATCGTCGCTCAGCTCGACATCCCGGTGC
GCCAGGTCATGATCGAGGCCCGCATCGTCGAGGCCACGGTCGATTACGACAAGCAATTGGGCGTACGTTGGGGTGGTACA
TCCAGAGGCCATGGCAACACGTCGGTCGGAGGCTTGAACGCGCTGGGCGATATCGATGGCAAGACCGGCACTGCCGCTGG
TAGCAACGTGCCTTTCGTCGACCTGGGCGCCGCCGGCGCCACCAGCGGCATTGGTATCGGATTCGTGACCAACAACACTC
TGATCGACCTGGAGCTCTCCGCCATGGAGAAAACCGGTAACGGCGAAGTGGTTTCGCAGCCCAAGGTGATCACCTCCGAC
AAGGAAACCGCCAAGATCCTCAAAGGCACTGAGGTGCCTTATCAGGAAGCCAGCTCCAGCGGCGCAACCACCGTGTCGTT
CAAGGAAGCTTCCCTGTCACTTGAGGTAACCCCGCAGATCACGCCCGACAATCGCATCATCATGGAAGTGAAGGTCACCA
AGGATGAGCCTGACTACCTCAACGAAGTGCTCGGCGTGCCGCCGATCAACAAGAACGAGGTGAACTCCAAGGTGCTGATC
AACGATGGCGAAACCATCGTGATCGGTGGCGTGTTCTCCAATTCGCAGAATAAGACCGTCGACAAGGTGCCATTTCTTGG
CGATGTGCCGTATGTTGGTCGCCTTTTCCGTCGGGACGTCGTTTCGGAGACCAAATCCGAGCTGCTGGTATTCCTGACTC
CGCGTATCATGAACAACCAGGCGATTGCGGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(541-697)

AMIN domain (AMIN)

(38-119)

Secretin and TonB N terminus short domain (STN)

(305-351)

Bacterial type II/III secretion system short domain (Secretin_N)

(380-455)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

69.571

100

0.712
  comQ Acinetobacter baylyi ADP1

43.191

100

0.445
  pilQ Acinetobacter baumannii D1279779

40.189

100

0.421
  pilQ Acinetobacter baumannii strain A118

40.189

100

0.421
  pilQ Legionella pneumophila strain Lp02

39.913

97.592

0.39
  pilQ Legionella pneumophila strain ERS1305867

39.768

97.592

0.388