Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   N2A96_RS01240 Genome accession   NZ_CP104047
Coordinates   212634..213287 (+) Length   217 a.a.
NCBI ID   WP_004347099.1    Uniprot ID   -
Organism   Streptococcus parauberis strain KSP10     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 207634..218287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2A96_RS01225 (N2A96_01225) - 209218..210495 (+) 1278 WP_004347107.1 ABC transporter permease -
  N2A96_RS01230 (N2A96_01230) - 210505..211161 (+) 657 WP_004347102.1 ABC transporter ATP-binding protein -
  N2A96_RS01235 (N2A96_01235) - 211161..212537 (+) 1377 WP_004347101.1 ABC transporter permease -
  N2A96_RS01240 (N2A96_01240) ciaR 212634..213287 (+) 654 WP_004347099.1 response regulator transcription factor Regulator
  N2A96_RS01245 (N2A96_01245) - 213284..214603 (+) 1320 WP_037622004.1 HAMP domain-containing sensor histidine kinase -
  N2A96_RS01250 (N2A96_01250) - 215043..215141 (+) 99 WP_259976816.1 group II intron maturase-specific domain-containing protein -
  N2A96_RS01255 (N2A96_01255) - 215872..216699 (+) 828 WP_037622024.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25247.22 Da        Isoelectric Point: 4.8206

>NTDB_id=626591 N2A96_RS01240 WP_004347099.1 212634..213287(+) (ciaR) [Streptococcus parauberis strain KSP10]
MKILTVEDDNLIREGISEYLSEFGYFVIQAKDGREALSKFNSDINLVILDIQIPFINGLDVLKEIRKKSNLPILILTAFS
DEEYKIDAFINLVDGYVEKPFSLPVLKARIDSLIKKNYGHLEKFEYKNLSVNFNSYTAKINGEEIDVNPKELEILKCLLD
NDGQVLTRMQIIDYVWKDSEEIPYDRVIDVYIKEIRKKLQLDCIATIRNVGYKLERK

Nucleotide


Download         Length: 654 bp        

>NTDB_id=626591 N2A96_RS01240 WP_004347099.1 212634..213287(+) (ciaR) [Streptococcus parauberis strain KSP10]
ATGAAAATATTAACTGTTGAAGATGATAATTTGATAAGAGAGGGAATAAGTGAATATCTATCAGAATTTGGATATTTTGT
TATTCAAGCTAAAGATGGAAGAGAAGCATTGTCAAAATTTAATAGCGATATAAATTTGGTTATCTTAGACATTCAGATAC
CTTTTATAAATGGTTTAGATGTGTTGAAGGAAATTAGAAAGAAAAGCAATTTACCAATTCTAATCTTGACTGCATTTAGT
GATGAAGAATATAAAATTGATGCATTTATTAATTTAGTAGATGGGTATGTAGAAAAGCCATTTTCATTGCCGGTCTTAAA
GGCTAGAATAGATTCTTTAATTAAGAAGAATTACGGACATTTAGAGAAGTTTGAATATAAGAATCTTTCGGTTAATTTTA
ATAGCTATACAGCTAAAATAAACGGTGAAGAAATAGATGTAAACCCAAAAGAACTAGAAATATTAAAATGTTTGTTGGAT
AATGATGGACAAGTTTTAACAAGAATGCAAATTATTGATTATGTCTGGAAAGATAGCGAAGAAATTCCTTATGATCGAGT
AATAGATGTATATATAAAAGAAATTAGAAAAAAATTACAATTAGATTGTATAGCTACTATAAGAAATGTAGGATATAAAT
TGGAGAGAAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(142-214)

Response regulator receiver domain (Response_reg)

(3-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus mutans UA159

36.323

100

0.373
  micA Streptococcus pneumoniae Cp1015

34.483

100

0.369
  braR Staphylococcus aureus N315

34.632

100

0.369
  ciaR Streptococcus pneumoniae Rx1

35.874

100

0.369
  ciaR Streptococcus pneumoniae D39

35.874

100

0.369
  ciaR Streptococcus pneumoniae R6

35.874

100

0.369
  ciaR Streptococcus pneumoniae TIGR4

35.874

100

0.369
  vicR Streptococcus mutans UA159

33.906

100

0.364