Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VIBNI_RS14360 Genome accession   NC_022528
Coordinates   3221422..3221964 (-) Length   180 a.a.
NCBI ID   WP_022551628.1    Uniprot ID   U4K8W8
Organism   Vibrio nigripulchritudo     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3216422..3226964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIBNI_RS14350 (VIBNI_A3026) - 3218368..3219921 (-) 1554 WP_022551626.1 site-specific integrase -
  VIBNI_RS14355 (VIBNI_A3027) - 3219938..3221248 (-) 1311 WP_022609151.1 site-specific integrase -
  VIBNI_RS14360 (VIBNI_A3028) ssb 3221422..3221964 (-) 543 WP_022551628.1 single-stranded DNA-binding protein Machinery gene
  VIBNI_RS14365 (VIBNI_A3030) - 3222357..3222998 (+) 642 WP_022551629.1 LuxR C-terminal-related transcriptional regulator -
  VIBNI_RS14370 (VIBNI_A3031) galU 3223090..3223959 (+) 870 WP_004405144.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  VIBNI_RS14375 (VIBNI_A3032) uvrA 3224090..3226912 (+) 2823 WP_022551630.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19875.94 Da        Isoelectric Point: 4.9269

>NTDB_id=62581 VIBNI_RS14360 WP_022551628.1 3221422..3221964(-) (ssb) [Vibrio nigripulchritudo]
MASRGINKVILVGNLGNDPEIRYMPSGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYTTEVVVQGFNGVMQMLGGRQQGQGAPGQGMGGQQQQGGWGQPQQPAQQQSYQQPAAPQQQAP
QQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=62581 VIBNI_RS14360 WP_022551628.1 3221422..3221964(-) (ssb) [Vibrio nigripulchritudo]
ATGGCCAGCCGTGGAATTAATAAAGTTATTTTGGTGGGGAATTTAGGAAATGACCCTGAAATTCGTTATATGCCGAGTGG
CGGCGCGGTGGCGAATATTACAATTGCGACCTCTGAATCGTGGCGCGACAAAGCGACTGGCGAACAGCGCGAAAAGACAG
AATGGCACCGTGTGGCATTGTTTGGAAAGCTAGCAGAAGTAGCGGGTGAGTACCTTCGCAAAGGTTCTCAGGTTTACATT
GAAGGTCAGCTTCAGACTCGTAAATGGCAAGATCAGAATGGTCAGGATCGCTACACAACAGAAGTGGTTGTACAAGGCTT
CAATGGTGTGATGCAGATGCTGGGTGGTCGCCAACAAGGTCAGGGTGCACCGGGTCAAGGTATGGGAGGTCAGCAGCAAC
AAGGTGGTTGGGGACAGCCTCAACAGCCTGCACAGCAGCAATCTTACCAGCAGCCAGCTGCGCCTCAGCAACAAGCACCG
CAACAGGCTCAACCACAATATAATGAGCCACCAATGGATTTTGATGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U4K8W8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.11

100

0.806
  ssb Glaesserella parasuis strain SC1401

56.757

100

0.583
  ssb Neisseria meningitidis MC58

44.068

98.333

0.433
  ssb Neisseria gonorrhoeae MS11

44.068

98.333

0.433
  ssb Latilactobacillus sakei subsp. sakei 23K

35.912

100

0.361

Multiple sequence alignment