Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LK342_RS09615 Genome accession   NZ_CP086574
Coordinates   2011409..2011879 (-) Length   156 a.a.
NCBI ID   WP_047437043.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain RIVM_M046968     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2006409..2016879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK342_RS09545 (LK342_09545) - 2006608..2007024 (-) 417 WP_000590122.1 hypothetical protein -
  LK342_RS09550 (LK342_09550) - 2007052..2007252 (-) 201 WP_000265043.1 DUF1514 family protein -
  LK342_RS09555 (LK342_09555) - 2007252..2007401 (-) 150 WP_000595265.1 transcriptional activator RinB -
  LK342_RS09560 (LK342_09560) - 2007398..2007784 (-) 387 WP_000592207.1 hypothetical protein -
  LK342_RS09565 (LK342_09565) - 2007781..2007987 (-) 207 WP_047437023.1 DUF1381 domain-containing protein -
  LK342_RS09570 (LK342_09570) - 2007984..2008229 (-) 246 WP_001282074.1 hypothetical protein -
  LK342_RS09575 (LK342_09575) - 2008266..2008802 (-) 537 Protein_1853 dUTP diphosphatase -
  LK342_RS09580 (LK342_09580) - 2008795..2009043 (-) 249 WP_047437026.1 DUF1024 family protein -
  LK342_RS09585 (LK342_09585) - 2009036..2009200 (-) 165 WP_178136457.1 hypothetical protein -
  LK342_RS09590 (LK342_09590) - 2009215..2009463 (-) 249 WP_047437029.1 SAV1978 family virulence-associated passenger protein -
  LK342_RS09595 (LK342_09595) - 2009464..2009835 (-) 372 WP_047437032.1 SA1788 family PVL leukocidin-associated protein -
  LK342_RS09600 (LK342_09600) - 2009848..2010252 (-) 405 WP_047437035.1 RusA family crossover junction endodeoxyribonuclease -
  LK342_RS09605 (LK342_09605) - 2010261..2010479 (-) 219 WP_000338528.1 hypothetical protein -
  LK342_RS09610 (LK342_09610) - 2010486..2011379 (-) 894 WP_047437040.1 DnaD domain-containing protein -
  LK342_RS09615 (LK342_09615) ssbA 2011409..2011879 (-) 471 WP_047437043.1 single-stranded DNA-binding protein Machinery gene
  LK342_RS09620 (LK342_09620) - 2011880..2012497 (-) 618 WP_071621397.1 MBL fold metallo-hydrolase -
  LK342_RS09625 (LK342_09625) - 2012578..2013498 (-) 921 WP_000138475.1 recombinase RecT -
  LK342_RS09630 (LK342_09630) - 2013500..2015443 (-) 1944 WP_047437048.1 AAA family ATPase -
  LK342_RS09635 (LK342_09635) - 2015452..2015715 (-) 264 WP_072292182.1 hypothetical protein -
  LK342_RS09640 (LK342_09640) - 2015724..2015984 (-) 261 WP_047437050.1 DUF1108 family protein -
  LK342_RS09645 (LK342_09645) - 2015989..2016291 (-) 303 WP_047437053.1 DUF2482 family protein -
  LK342_RS09650 (LK342_09650) - 2016386..2016547 (-) 162 WP_000066011.1 DUF1270 domain-containing protein -
  LK342_RS09655 (LK342_09655) - 2016544..2016864 (-) 321 WP_001120197.1 DUF771 domain-containing protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17693.65 Da        Isoelectric Point: 8.3520

>NTDB_id=625598 LK342_RS09615 WP_047437043.1 2011409..2011879(-) (ssbA) [Staphylococcus argenteus strain RIVM_M046968]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVAHSIQFLEPKNTNDNQQDLYQKQAQQSRGQSQYPYNKPVKDNPFANANGPIEIDDNDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=625598 LK342_RS09615 WP_047437043.1 2011409..2011879(-) (ssbA) [Staphylococcus argenteus strain RIVM_M046968]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCGCAAGGAGAACGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCATTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCCATAGTATTCAATTTTTAGAACCGAAGAA
CACAAATGATAATCAACAAGATTTATACCAAAAACAAGCGCAACAATCACGTGGACAGTCTCAATATCCATATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.367

100

0.628
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.551
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

67.949

0.397
  ssb Neisseria meningitidis MC58

34.104

100

0.378
  ssb Neisseria gonorrhoeae MS11

34.104

100

0.378
  ssb Vibrio cholerae strain A1552

31.844

100

0.365