Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LK336_RS08095 Genome accession   NZ_CP086572
Coordinates   1649942..1650445 (-) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus argenteus strain RIVM_M036020     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1644942..1655445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK336_RS08060 (LK336_08055) - 1645241..1645504 (+) 264 WP_001055897.1 helix-turn-helix transcriptional regulator -
  LK336_RS08065 (LK336_08060) - 1645640..1646212 (-) 573 WP_031787418.1 PepSY domain-containing protein -
  LK336_RS08070 (LK336_08065) - 1646389..1646760 (-) 372 WP_031787417.1 YxeA family protein -
  LK336_RS08075 (LK336_08070) - 1647132..1647743 (-) 612 WP_031787416.1 toxin -
  LK336_RS08080 (LK336_08075) - 1647999..1648399 (+) 401 Protein_1551 tyrosine-type recombinase/integrase -
  LK336_RS08085 (LK336_08080) - 1648405..1649412 (+) 1008 WP_031787415.1 Abi family protein -
  LK336_RS08090 (LK336_08085) rpsR 1649648..1649890 (-) 243 WP_000897044.1 30S ribosomal protein S18 -
  LK336_RS08095 (LK336_08090) ssbA 1649942..1650445 (-) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  LK336_RS08100 (LK336_08095) rpsF 1650466..1650762 (-) 297 WP_001261459.1 30S ribosomal protein S6 -
  LK336_RS08105 (LK336_08100) - 1651006..1651197 (+) 192 WP_031787414.1 hypothetical protein -
  LK336_RS08110 (LK336_08105) ychF 1651283..1652380 (-) 1098 WP_001218728.1 redox-regulated ATPase YchF -
  LK336_RS08115 (LK336_08110) - 1652392..1652595 (-) 204 WP_000157345.1 DUF951 domain-containing protein -
  LK336_RS08120 (LK336_08115) - 1652625..1653506 (-) 882 WP_000373078.1 mechanosensitive ion channel family protein -
  LK336_RS08125 (LK336_08120) - 1653652..1654497 (-) 846 WP_014373770.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=625550 LK336_RS08095 WP_000934799.1 1649942..1650445(-) (ssbA) [Staphylococcus argenteus strain RIVM_M036020]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=625550 LK336_RS08095 WP_000934799.1 1649942..1650445(-) (ssbA) [Staphylococcus argenteus strain RIVM_M036020]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACATTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTACTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTATAATAACTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365