Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   LMD38_RS20535 Genome accession   NZ_CP086328
Coordinates   3951865..3952041 (-) Length   58 a.a.
NCBI ID   WP_001986215.1    Uniprot ID   A0A9W5QJV7
Organism   Bacillus pacificus strain anQ-h4     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 3946865..3957041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMD38_RS20515 (LMD38_20515) - 3947646..3948392 (-) 747 WP_000966125.1 YjbA family protein -
  LMD38_RS20520 (LMD38_20520) - 3948536..3949324 (-) 789 WP_000539320.1 DUF2268 domain-containing protein -
  LMD38_RS20525 (LMD38_20525) fabF 3949431..3950669 (-) 1239 WP_000412655.1 beta-ketoacyl-ACP synthase II -
  LMD38_RS20530 (LMD38_20530) fabH 3950701..3951633 (-) 933 WP_001100536.1 beta-ketoacyl-ACP synthase III -
  LMD38_RS20535 (LMD38_20535) comZ 3951865..3952041 (-) 177 WP_001986215.1 ComZ family protein Regulator
  LMD38_RS20540 (LMD38_20540) - 3952095..3952967 (-) 873 WP_062822688.1 NAD(P)-dependent oxidoreductase -
  LMD38_RS20545 (LMD38_20545) - 3952997..3953731 (-) 735 WP_000028715.1 hydrolase -
  LMD38_RS20550 (LMD38_20550) - 3953889..3954071 (+) 183 WP_001211115.1 YjzD family protein -
  LMD38_RS20555 (LMD38_20555) - 3954218..3954526 (+) 309 WP_061183088.1 hypothetical protein -

Sequence

Protein


Download         Length: 58 a.a.        Molecular weight: 6576.74 Da        Isoelectric Point: 4.4797

>NTDB_id=624318 LMD38_RS20535 WP_001986215.1 3951865..3952041(-) (comZ) [Bacillus pacificus strain anQ-h4]
MNEKSMQFLQIAMKHLPEAKAILDDNGIALDMEKAQPVLELLMKVMNEAYELGKADKE

Nucleotide


Download         Length: 177 bp        

>NTDB_id=624318 LMD38_RS20535 WP_001986215.1 3951865..3952041(-) (comZ) [Bacillus pacificus strain anQ-h4]
ATGAATGAGAAAAGCATGCAATTTTTACAAATCGCAATGAAGCATTTACCAGAAGCTAAGGCCATTTTAGATGATAATGG
AATTGCGCTTGATATGGAGAAAGCTCAACCAGTATTAGAGTTATTGATGAAAGTTATGAACGAAGCATATGAGCTCGGGA
AAGCAGATAAAGAATAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(3-57)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

61.818

94.828

0.586