Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LK401_RS01320 Genome accession   NZ_CP085952
Coordinates   270543..271049 (+) Length   168 a.a.
NCBI ID   WP_042593471.1    Uniprot ID   A0A0D0HQS7
Organism   Haemophilus influenzae strain FDAARGOS_1560     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 265543..276049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK401_RS01315 (LK401_01315) uvrA 267558..270389 (-) 2832 WP_058222191.1 excinuclease ABC subunit UvrA -
  LK401_RS01320 (LK401_01320) ssb 270543..271049 (+) 507 WP_042593471.1 single-stranded DNA-binding protein Machinery gene
  LK401_RS01325 (LK401_01325) - 271227..272054 (-) 828 WP_058222190.1 energy transducer TonB -
  LK401_RS01330 (LK401_01330) exbD 272064..272507 (-) 444 WP_005648853.1 TonB system transport protein ExbD -
  LK401_RS01335 (LK401_01335) exbB 272511..272963 (-) 453 WP_005648856.1 TonB-system energizer ExbB -
  LK401_RS01340 (LK401_01340) bcp 273132..273599 (-) 468 WP_005668209.1 thioredoxin-dependent thiol peroxidase -
  LK401_RS01345 (LK401_01345) dapA 273700..274596 (+) 897 WP_050846026.1 4-hydroxy-tetrahydrodipicolinate synthase -
  LK401_RS01350 (LK401_01350) bamC 274707..275336 (+) 630 WP_038439193.1 outer membrane protein assembly factor BamC -
  LK401_RS01355 (LK401_01355) hpf 275526..275849 (+) 324 WP_005653397.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18753.50 Da        Isoelectric Point: 5.2649

>NTDB_id=621568 LK401_RS01320 WP_042593471.1 270543..271049(+) (ssb) [Haemophilus influenzae strain FDAARGOS_1560]
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNASGSGNDMGGTPQSSYQARQTNNGNSYQSSRPAPQQSAPQAEPPMD
GFDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=621568 LK401_RS01320 WP_042593471.1 270543..271049(+) (ssb) [Haemophilus influenzae strain FDAARGOS_1560]
ATGGCTGGAATTAATAAAGTCATTATTGTAGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGATCGTAATACTGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTCTATCGTCGTCAAGCAGAGATTTGCGGCGAATATTTACGTAAAGGTTCTCAAGTATATGTGGAGGGT
CGTTTAAAAACGCGTAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAAGTGGTTCTGGTAATGATATGGGCGGTACGCCACAATCTTCTTACCAAGCTCGTC
AAACTAACAATGGTAATAGTTATCAATCATCTCGCCCAGCTCCACAACAATCTGCACCACAGGCTGAACCACCAATGGAT
GGATTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D0HQS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

67.778

100

0.726
  ssb Vibrio cholerae strain A1552

55.495

100

0.601
  ssb Neisseria meningitidis MC58

50.289

100

0.518
  ssb Neisseria gonorrhoeae MS11

50.289

100

0.518
  ssb Latilactobacillus sakei subsp. sakei 23K

34.27

100

0.363
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.057

100

0.363