Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD   Type   Machinery gene
Locus tag   HIFGL_RS00205 Genome accession   NC_022356
Coordinates   43747..44160 (+) Length   137 a.a.
NCBI ID   WP_021034381.1    Uniprot ID   -
Organism   Haemophilus influenzae KR494     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 38747..49160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIFGL_RS00185 (HifGL_000036) - 39229..41829 (-) 2601 WP_021034377.1 penicillin-binding protein 1A -
  HIFGL_RS00190 (HifGL_000037) comA 41928..42725 (+) 798 WP_021034378.1 pilus assembly protein PilM Machinery gene
  HIFGL_RS00195 (HifGL_000038) comB 42726..43232 (+) 507 WP_021034379.1 hypothetical protein Machinery gene
  HIFGL_RS00200 (HifGL_000039) comC 43229..43750 (+) 522 WP_021034380.1 hypothetical protein Machinery gene
  HIFGL_RS00205 (HifGL_000040) comD 43747..44160 (+) 414 WP_021034381.1 pilus assembly protein PilP Machinery gene
  HIFGL_RS00210 (HifGL_000041) comE 44170..45513 (+) 1344 WP_021034382.1 type IV pilus secretin PilQ Machinery gene
  HIFGL_RS00215 tnpA 45510..45963 (+) 454 Protein_42 IS200/IS605 family transposase -
  HIFGL_RS00220 (HifGL_000043) - 46211..46897 (+) 687 WP_021034384.1 ComF family protein -
  HIFGL_RS00225 (HifGL_000044) nfuA 46973..47569 (+) 597 WP_021034385.1 Fe-S biogenesis protein NfuA -
  HIFGL_RS00230 (HifGL_000045) nudC 47637..48431 (+) 795 WP_021034386.1 NAD(+) diphosphatase -
  HIFGL_RS00235 (HifGL_000046) - 48467..49057 (+) 591 WP_021034387.1 YjaG family protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15658.77 Da        Isoelectric Point: 4.3509

>NTDB_id=62151 HIFGL_RS00205 WP_021034381.1 43747..44160(+) (comD) [Haemophilus influenzae KR494]
MKYWFFLTALLFINCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLLDQNLQIYSVLEGVDVAQEGYIVEKIDQNNVQFMRKLGEQCDSSEWKKLSF

Nucleotide


Download         Length: 414 bp        

>NTDB_id=62151 HIFGL_RS00205 WP_021034381.1 43747..44160(+) (comD) [Haemophilus influenzae KR494]
ATGAAGTATTGGTTTTTCCTAACTGCATTGCTTTTTATAAATTGCAGTTGGGGGCAGGATCCTTTCGATAAAACACAACG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCCTTGAATGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCGTTTGCGTTATTGCTGGATCAGAATTTGCAAATTTACAGTGTTTTAGAGGGTGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCGACCAAAACAATGTTCAATTTATGCGCAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(26-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD Haemophilus influenzae 86-028NP

94.161

100

0.942
  comD Haemophilus influenzae Rd KW20

93.431

100

0.934

Multiple sequence alignment