Detailed information
Bioinformatically predicted
Overview
| Name | comB | Type | Machinery gene |
| Locus tag | HIFGL_RS00195 | Genome accession | NC_022356 |
| Coordinates | 42726..43232 (+) | Length | 168 a.a. |
| NCBI ID | WP_021034379.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae KR494 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 37726..48232
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HIFGL_RS00175 (HifGL_000034) | - | 37829..38158 (-) | 330 | WP_005629464.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HIFGL_RS00180 (HifGL_000035) | - | 38310..39155 (-) | 846 | WP_021034376.1 | 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ | - |
| HIFGL_RS00185 (HifGL_000036) | - | 39229..41829 (-) | 2601 | WP_021034377.1 | penicillin-binding protein 1A | - |
| HIFGL_RS00190 (HifGL_000037) | comA | 41928..42725 (+) | 798 | WP_021034378.1 | pilus assembly protein PilM | Machinery gene |
| HIFGL_RS00195 (HifGL_000038) | comB | 42726..43232 (+) | 507 | WP_021034379.1 | hypothetical protein | Machinery gene |
| HIFGL_RS00200 (HifGL_000039) | comC | 43229..43750 (+) | 522 | WP_021034380.1 | hypothetical protein | Machinery gene |
| HIFGL_RS00205 (HifGL_000040) | comD | 43747..44160 (+) | 414 | WP_021034381.1 | pilus assembly protein PilP | Machinery gene |
| HIFGL_RS00210 (HifGL_000041) | comE | 44170..45513 (+) | 1344 | WP_021034382.1 | type IV pilus secretin PilQ | Machinery gene |
| HIFGL_RS00215 | tnpA | 45510..45963 (+) | 454 | Protein_42 | IS200/IS605 family transposase | - |
| HIFGL_RS00220 (HifGL_000043) | - | 46211..46897 (+) | 687 | WP_021034384.1 | ComF family protein | - |
| HIFGL_RS00225 (HifGL_000044) | nfuA | 46973..47569 (+) | 597 | WP_021034385.1 | Fe-S biogenesis protein NfuA | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 20022.10 Da Isoelectric Point: 10.1232
>NTDB_id=62149 HIFGL_RS00195 WP_021034379.1 42726..43232(+) (comB) [Haemophilus influenzae KR494]
MSMNLLPWRTYQHQNRLRRLAFYIALFILLAINLMLAFSNLIEQQKQHLQAQQTSFEKLNQQFHKTTKQIKQLRSAVQVG
EILTSIPKEQVKKSLQLLSELPFQQGELNKFKQDAHNLSLEGLAQDQREFELIHQFLKKHFPNVKLSQFHPEQQSLYFRF
DMEQGEEK
MSMNLLPWRTYQHQNRLRRLAFYIALFILLAINLMLAFSNLIEQQKQHLQAQQTSFEKLNQQFHKTTKQIKQLRSAVQVG
EILTSIPKEQVKKSLQLLSELPFQQGELNKFKQDAHNLSLEGLAQDQREFELIHQFLKKHFPNVKLSQFHPEQQSLYFRF
DMEQGEEK
Nucleotide
Download Length: 507 bp
>NTDB_id=62149 HIFGL_RS00195 WP_021034379.1 42726..43232(+) (comB) [Haemophilus influenzae KR494]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAACCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAACATTTGCAGGCGCAGCAAA
CATCTTTTGAAAAACTTAATCAGCAATTTCATAAAACAACCAAGCAAATTAAACAGTTGCGTAGTGCAGTGCAGGTTGGC
GAAATTTTGACATCTATTCCTAAAGAGCAAGTAAAAAAGAGTTTACAGCTGCTAAGTGAATTACCTTTTCAGCAAGGAGA
ACTGAATAAATTTAAACAAGATGCTCATAACTTAAGTTTGGAAGGTCTCGCACAAGATCAAAGAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGCCAGTTTCATCCTGAACAACAGTCATTGTATTTTCGCTTT
GATATGGAACAAGGAGAAGAAAAGTGA
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAACCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAACATTTGCAGGCGCAGCAAA
CATCTTTTGAAAAACTTAATCAGCAATTTCATAAAACAACCAAGCAAATTAAACAGTTGCGTAGTGCAGTGCAGGTTGGC
GAAATTTTGACATCTATTCCTAAAGAGCAAGTAAAAAAGAGTTTACAGCTGCTAAGTGAATTACCTTTTCAGCAAGGAGA
ACTGAATAAATTTAAACAAGATGCTCATAACTTAAGTTTGGAAGGTCTCGCACAAGATCAAAGAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGCCAGTTTCATCCTGAACAACAGTCATTGTATTTTCGCTTT
GATATGGAACAAGGAGAAGAAAAGTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB | Haemophilus influenzae 86-028NP |
87.5 |
100 |
0.875 |
| comB | Haemophilus influenzae Rd KW20 |
86.31 |
100 |
0.863 |