Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HP399_RS30375 Genome accession   NZ_CP085876
Coordinates   6576900..6577379 (-) Length   159 a.a.
NCBI ID   WP_007720185.1    Uniprot ID   J3AAQ3
Organism   Brevibacillus sp. DP1.3A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6571900..6582379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP399_RS30355 (HP399_030405) rplI 6573207..6573650 (-) 444 WP_173620476.1 50S ribosomal protein L9 -
  HP399_RS30360 (HP399_030410) - 6573677..6575614 (-) 1938 WP_007720189.1 DHH family phosphoesterase -
  HP399_RS30365 (HP399_030415) - 6575619..6576527 (-) 909 WP_173620366.1 DUF2232 domain-containing protein -
  HP399_RS30370 (HP399_030420) rpsR 6576629..6576859 (-) 231 WP_007720187.1 30S ribosomal protein S18 -
  HP399_RS30375 (HP399_030425) ssbA 6576900..6577379 (-) 480 WP_007720185.1 single-stranded DNA-binding protein Machinery gene
  HP399_RS30380 (HP399_030430) rpsF 6577409..6577696 (-) 288 WP_007720183.1 30S ribosomal protein S6 -
  HP399_RS30385 (HP399_030435) ychF 6577840..6578940 (-) 1101 WP_173620365.1 redox-regulated ATPase YchF -
  HP399_RS30390 (HP399_030440) - 6579155..6579778 (+) 624 WP_173620364.1 NAD(P)-dependent oxidoreductase -
  HP399_RS30395 (HP399_030445) pepF 6579847..6581757 (-) 1911 WP_173620363.1 oligoendopeptidase F -
  HP399_RS30400 (HP399_030450) - 6582114..6582200 (+) 87 WP_017246824.1 YjcZ family sporulation protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17202.10 Da        Isoelectric Point: 5.2753

>NTDB_id=621082 HP399_RS30375 WP_007720185.1 6576900..6577379(-) (ssbA) [Brevibacillus sp. DP1.3A]
MNKVILIGNLTKDPELRYTPNGVAVATFTVAVNRPRTNQAGEKETDFINIVAWQKLADLCASYLRKGRQAAIEGRMQTRS
YDNKEGKKVYVTEVVAENVQFLGGRGNESGGDNSGYDPGPGMGGGNKPSGQRNNDYDPFGDPFASAGKPINISDDDLPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=621082 HP399_RS30375 WP_007720185.1 6576900..6577379(-) (ssbA) [Brevibacillus sp. DP1.3A]
ATGAATAAAGTCATTCTCATCGGCAACCTGACGAAAGATCCTGAACTTCGCTACACGCCAAATGGCGTTGCCGTTGCTAC
TTTTACTGTGGCCGTTAATCGTCCCCGCACCAATCAAGCGGGAGAGAAAGAAACGGACTTCATTAACATTGTCGCTTGGC
AAAAACTTGCCGACCTGTGCGCAAGCTATTTGCGTAAAGGTAGACAAGCAGCCATCGAGGGACGTATGCAAACACGCTCC
TATGATAATAAAGAAGGTAAAAAGGTATACGTGACGGAAGTCGTTGCGGAGAACGTTCAATTTTTGGGCGGTCGAGGCAA
TGAATCCGGCGGAGACAATTCAGGATACGATCCAGGACCAGGCATGGGTGGCGGTAACAAACCATCCGGTCAACGAAATA
ATGACTATGATCCGTTTGGTGATCCTTTCGCGAGTGCAGGCAAGCCGATCAACATTTCAGATGATGACTTGCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J3AAQ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.907

100

0.572
  ssb Latilactobacillus sakei subsp. sakei 23K

43.195

100

0.459
  ssb Vibrio cholerae strain A1552

36.757

100

0.428
  ssb Neisseria gonorrhoeae MS11

36.571

100

0.403
  ssb Neisseria meningitidis MC58

36

100

0.396
  ssb Glaesserella parasuis strain SC1401

33.898

100

0.377