Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HP435_RS28480 Genome accession   NZ_CP085874
Coordinates   6128085..6128564 (-) Length   159 a.a.
NCBI ID   WP_063231668.1    Uniprot ID   A0A4Y3PQM9
Organism   Brevibacillus sp. HD3.3A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6123085..6133564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP435_RS28460 (HP435_28520) rplI 6124408..6124851 (-) 444 WP_122962248.1 50S ribosomal protein L9 -
  HP435_RS28465 (HP435_28525) - 6124878..6126815 (-) 1938 WP_063231664.1 DHH family phosphoesterase -
  HP435_RS28470 (HP435_28530) - 6126820..6127728 (-) 909 WP_173598916.1 DUF2232 domain-containing protein -
  HP435_RS28475 (HP435_28535) rpsR 6127813..6128043 (-) 231 WP_005831740.1 30S ribosomal protein S18 -
  HP435_RS28480 (HP435_28540) ssbA 6128085..6128564 (-) 480 WP_063231668.1 single-stranded DNA-binding protein Machinery gene
  HP435_RS28485 (HP435_28545) rpsF 6128594..6128881 (-) 288 WP_047070274.1 30S ribosomal protein S6 -
  HP435_RS28490 (HP435_28550) ychF 6129022..6130122 (-) 1101 WP_122962245.1 redox-regulated ATPase YchF -
  HP435_RS28495 (HP435_28555) - 6130354..6130977 (+) 624 WP_173598915.1 NAD(P)-dependent oxidoreductase -
  HP435_RS28500 (HP435_28560) - 6131138..6131506 (+) 369 WP_229049782.1 hypothetical protein -
  HP435_RS28505 (HP435_28565) pepF 6131612..6133522 (-) 1911 WP_122962397.1 oligoendopeptidase F -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17178.06 Da        Isoelectric Point: 5.2753

>NTDB_id=621039 HP435_RS28480 WP_063231668.1 6128085..6128564(-) (ssbA) [Brevibacillus sp. HD3.3A]
MNKVILIGNLTKDPELRYTPNGVAVATFTVAINRPRTNQAGEREADFINIVAWQKLADLCASYLRKGRQAAIEGRLQTRS
YDNKEGKRVYVTEVVAENVQFLGGRGNEGGGDNAGYDPGPGFGGGNKPSGQRNNDFDPFGDPFASAGKPINISDDDLPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=621039 HP435_RS28480 WP_063231668.1 6128085..6128564(-) (ssbA) [Brevibacillus sp. HD3.3A]
ATGAATAAAGTTATTCTCATCGGCAACCTGACGAAAGATCCTGAACTTCGCTACACGCCAAATGGCGTTGCCGTTGCTAC
TTTTACCGTGGCTATCAATCGTCCTCGCACTAACCAGGCGGGTGAGAGAGAAGCCGATTTCATTAATATTGTCGCTTGGC
AAAAACTTGCCGATCTTTGTGCAAGCTACTTGCGCAAAGGAAGACAAGCTGCCATCGAAGGGCGCCTTCAGACGCGTTCC
TACGATAATAAAGAAGGAAAACGCGTATACGTAACGGAAGTCGTTGCTGAAAACGTTCAATTTTTGGGCGGACGAGGCAA
TGAAGGCGGCGGAGATAACGCAGGATACGATCCAGGACCGGGCTTTGGTGGCGGTAACAAGCCATCCGGTCAGAGAAACA
ATGACTTTGATCCGTTTGGTGATCCCTTCGCGAGTGCAGGCAAGCCGATCAACATCTCTGATGATGACTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y3PQM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.233

100

0.597
  ssb Latilactobacillus sakei subsp. sakei 23K

43.678

100

0.478
  ssb Vibrio cholerae strain A1552

37.297

100

0.434
  ssb Neisseria gonorrhoeae MS11

36.571

100

0.403
  ssb Neisseria meningitidis MC58

36

100

0.396
  ssb Glaesserella parasuis strain SC1401

35.028

100

0.39