Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   SANR_RS08660 Genome accession   NC_022239
Coordinates   1767853..1769349 (-) Length   498 a.a.
NCBI ID   WP_020999799.1    Uniprot ID   -
Organism   Streptococcus anginosus C238     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1762853..1774349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SANR_RS08635 (SANR_1676) - 1762869..1763834 (+) 966 WP_003035453.1 LacI family DNA-binding transcriptional regulator -
  SANR_RS08640 (SANR_1677) - 1763907..1764731 (-) 825 WP_003035518.1 Cof-type HAD-IIB family hydrolase -
  SANR_RS08645 (SANR_1678) amiF 1764917..1765840 (-) 924 WP_003031730.1 ATP-binding cassette domain-containing protein Regulator
  SANR_RS08650 (SANR_1679) amiE 1765851..1766918 (-) 1068 WP_020999798.1 ABC transporter ATP-binding protein Regulator
  SANR_RS08655 (SANR_1680) amiD 1766927..1767853 (-) 927 WP_003074404.1 oligopeptide ABC transporter permease OppC Regulator
  SANR_RS08660 (SANR_1681) amiC 1767853..1769349 (-) 1497 WP_020999799.1 ABC transporter permease Regulator
  SANR_RS08665 (SANR_1682) amiA3 1769726..1771705 (-) 1980 WP_020999800.1 peptide ABC transporter substrate-binding protein Regulator
  SANR_RS08670 (SANR_1683) amiA3 1771901..1773877 (-) 1977 WP_003035484.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55863.06 Da        Isoelectric Point: 10.0807

>NTDB_id=61686 SANR_RS08660 WP_020999799.1 1767853..1769349(-) (amiC) [Streptococcus anginosus C238]
MKKYIFMRILRSLVSIFMVTTLTYTIIYTMVPRKLIFKQDPNYNKIATTPDKKANYENTIFERMGYIDYYDTKELQEKAS
KENSSVTVEPTNANKKIYEAYIKKLGRGWKLQQFKESKQFYATREVPVYERVLGFYGNLIQIDHTGAVKDASNPNLKRYI
RIENDPAIGWSVVGSGTRHKYLLYFNSQFPFIHQNFVRLNLGTSYPTYANLPVLQVISQGQGQTKTSEVQFPTGKKTSSV
NIYTRTYKSPKQADARDVANYGKDDPYTATESNYQYPSMIVSSSIVGLIGLALSYLIAVPLGSYMARFKNTLFDSISTGA
LTFLMSLPTIALVYIIRLIGSAIGLPDSFPILGAGDWRSYVLPAVILGLLSAPWTAVWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSSIPGAIIGVITGATLTETIFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCLSIFALLLGD
ILMTMLDPRIKLTSKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=61686 SANR_RS08660 WP_020999799.1 1767853..1769349(-) (amiC) [Streptococcus anginosus C238]
ATGAAGAAATATATTTTTATGCGTATCTTACGCTCTTTAGTATCTATTTTCATGGTAACAACGCTGACTTACACCATTAT
CTATACCATGGTGCCTAGGAAGTTGATTTTCAAACAGGACCCAAACTATAACAAAATAGCGACAACTCCTGATAAAAAAG
CCAATTACGAAAATACGATTTTTGAGCGTATGGGTTACATTGACTACTATGATACGAAGGAATTGCAAGAAAAAGCTAGT
AAAGAGAATTCTTCTGTAACAGTAGAACCTACTAATGCAAATAAAAAAATCTATGAAGCTTACATCAAAAAGCTGGGACG
CGGTTGGAAATTGCAGCAATTTAAAGAAAGCAAGCAATTTTATGCAACTCGTGAAGTTCCAGTCTATGAACGCGTTCTTG
GTTTCTATGGTAATTTGATTCAAATTGACCATACCGGTGCTGTGAAAGATGCTTCTAATCCGAATTTGAAGCGTTATATT
CGCATTGAAAATGATCCTGCCATTGGTTGGTCTGTTGTTGGTTCTGGAACGAGACATAAATATTTGTTGTACTTCAATAG
TCAGTTTCCATTTATCCACCAAAATTTTGTAAGATTAAATCTAGGAACTTCTTATCCGACCTATGCTAATCTTCCTGTTT
TACAGGTTATTTCACAAGGGCAAGGTCAAACGAAGACATCAGAAGTTCAATTTCCAACAGGAAAGAAAACATCATCTGTT
AATATTTATACGCGTACATATAAGTCTCCAAAACAAGCCGATGCACGCGATGTTGCTAATTACGGAAAAGATGATCCTTA
TACGGCGACAGAGAGCAATTATCAATATCCATCTATGATTGTGAGCTCTTCTATTGTTGGGTTGATTGGTTTGGCCTTGT
CATACTTAATCGCCGTTCCACTTGGATCTTATATGGCTCGCTTTAAGAATACATTGTTTGATAGTATTTCAACCGGTGCT
TTGACTTTCTTAATGTCACTGCCAACTATTGCCTTGGTTTATATCATTCGCTTGATTGGTTCAGCGATTGGCTTACCTGA
TTCATTCCCTATTTTGGGAGCAGGTGATTGGCGCTCTTATGTGTTGCCGGCAGTTATTCTTGGACTCTTGAGTGCGCCTT
GGACAGCAGTGTGGATTCGCCGTTATATGATTGACTTGCAATCACAAGATTTTGTTCGTTTTGCACGTGCAAAAGGTCTT
TCTGAAAAAGAAATTTCTAATAAACATATTTTCAAAAATGCTATGGTGCCACTTGTATCCAGTATACCTGGTGCTATTAT
CGGAGTTATCACAGGTGCAACCTTGACTGAAACAATTTTTGCTTTCCCTGGAATGGGTAAAATGCTGATTGACTCTGTCA
AAGCATCTAATAATTCTATGGTCGTTGGTCTTGTATTTATCTTTACATGTCTATCTATCTTTGCTCTTCTATTGGGTGAT
ATTCTGATGACCATGCTTGACCCACGTATTAAATTAACATCAAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

80.723

100

0.807
  amiC Streptococcus thermophilus LMG 18311

80.12

100

0.801
  amiC Streptococcus thermophilus LMD-9

79.92

100

0.799

Multiple sequence alignment