Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   SANR_RS08655 Genome accession   NC_022239
Coordinates   1766927..1767853 (-) Length   308 a.a.
NCBI ID   WP_003074404.1    Uniprot ID   -
Organism   Streptococcus anginosus C238     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1761927..1772853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SANR_RS08635 (SANR_1676) - 1762869..1763834 (+) 966 WP_003035453.1 LacI family DNA-binding transcriptional regulator -
  SANR_RS08640 (SANR_1677) - 1763907..1764731 (-) 825 WP_003035518.1 Cof-type HAD-IIB family hydrolase -
  SANR_RS08645 (SANR_1678) amiF 1764917..1765840 (-) 924 WP_003031730.1 ATP-binding cassette domain-containing protein Regulator
  SANR_RS08650 (SANR_1679) amiE 1765851..1766918 (-) 1068 WP_020999798.1 ABC transporter ATP-binding protein Regulator
  SANR_RS08655 (SANR_1680) amiD 1766927..1767853 (-) 927 WP_003074404.1 oligopeptide ABC transporter permease OppC Regulator
  SANR_RS08660 (SANR_1681) amiC 1767853..1769349 (-) 1497 WP_020999799.1 ABC transporter permease Regulator
  SANR_RS08665 (SANR_1682) amiA3 1769726..1771705 (-) 1980 WP_020999800.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34489.54 Da        Isoelectric Point: 9.8589

>NTDB_id=61685 SANR_RS08655 WP_003074404.1 1766927..1767853(-) (amiD) [Streptococcus anginosus C238]
MATIDKSKFTFVKRDDFASEIIDAPAYSYWKSVMRQFLRKKSTIAMLGILVAIVLMSFIYPIFSNFDFNDVSKVNDFSAR
YIKPNAQYWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGIVIGGIWGISKTVDRVMIEIYNIISNIPPLLIVIV
LTYSIGAGFWNLIFAMTITGWIGIAYNIRIQILRYRDLEYNLASRTLGTPTLKIIVKNIMPQLVSVIVTTASQLLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=61685 SANR_RS08655 WP_003074404.1 1766927..1767853(-) (amiD) [Streptococcus anginosus C238]
ATGGCTACAATTGATAAAAGTAAGTTCACATTTGTAAAACGCGATGATTTTGCCTCTGAAATAATTGATGCACCAGCTTA
TTCTTACTGGAAATCTGTTATGCGTCAATTCTTAAGGAAAAAATCAACAATTGCTATGTTGGGTATTCTTGTTGCAATTG
TTTTGATGAGTTTCATCTATCCGATTTTTTCAAATTTCGATTTTAATGATGTAAGTAAAGTAAATGATTTTAGTGCTCGT
TATATCAAACCGAATGCCCAATATTGGTTTGGTACAGATAGTAACGGGAAATCCCTCTTTGACGGAGTGTGGTTTGGAGC
ACGTAACTCTATTCTTATTTCAGTTATTGCAACCGTGATTAACCTTGTGATTGGTATTGTTATTGGTGGCATCTGGGGAA
TTTCAAAAACTGTCGATCGTGTGATGATTGAGATTTATAATATTATTTCTAACATCCCACCGCTTTTGATTGTCATTGTC
TTGACATACTCAATCGGTGCAGGTTTCTGGAATTTGATTTTTGCCATGACGATTACTGGTTGGATTGGGATTGCTTACAA
CATTCGTATCCAAATTCTACGTTATCGTGATTTAGAATACAACCTCGCCAGTCGTACATTGGGAACGCCAACGCTTAAAA
TTATTGTGAAAAATATTATGCCACAGTTGGTTTCTGTGATTGTTACAACTGCTTCACAATTACTTCCAAGTTTCATTTCA
TACGAAGCTTTTCTGTCTTTCTTTGGTTTGGGACTTCCTGTGACGGTGCCAAGTTTGGGACGGTTAATTTCAGATTATTC
ACAAAACGTGACAACAAATGCGTATCTTTTCTGGATTCCATTGACAACCTTGATTTTGGTTTCTCTTTCATTGTTCGTTG
TCGGTCAAAACTTAGCGGACGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

86.039

100

0.86
  amiD Streptococcus thermophilus LMG 18311

83.442

100

0.834
  amiD Streptococcus thermophilus LMD-9

83.442

100

0.834

Multiple sequence alignment