Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   SANR_RS08645 Genome accession   NC_022239
Coordinates   1764917..1765840 (-) Length   307 a.a.
NCBI ID   WP_003031730.1    Uniprot ID   I0SFK8
Organism   Streptococcus anginosus C238     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1759917..1770840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SANR_RS08630 (SANR_1675) - 1761431..1762888 (+) 1458 WP_020999797.1 sucrose-6-phosphate hydrolase -
  SANR_RS08635 (SANR_1676) - 1762869..1763834 (+) 966 WP_003035453.1 LacI family DNA-binding transcriptional regulator -
  SANR_RS08640 (SANR_1677) - 1763907..1764731 (-) 825 WP_003035518.1 Cof-type HAD-IIB family hydrolase -
  SANR_RS08645 (SANR_1678) amiF 1764917..1765840 (-) 924 WP_003031730.1 ATP-binding cassette domain-containing protein Regulator
  SANR_RS08650 (SANR_1679) amiE 1765851..1766918 (-) 1068 WP_020999798.1 ABC transporter ATP-binding protein Regulator
  SANR_RS08655 (SANR_1680) amiD 1766927..1767853 (-) 927 WP_003074404.1 oligopeptide ABC transporter permease OppC Regulator
  SANR_RS08660 (SANR_1681) amiC 1767853..1769349 (-) 1497 WP_020999799.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34802.03 Da        Isoelectric Point: 6.4261

>NTDB_id=61683 SANR_RS08645 WP_003031730.1 1764917..1765840(-) (amiF) [Streptococcus anginosus C238]
MPEKLVEVKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSHGEIFFEGKKINGKKSKE
EESEIIRKIQMIFQDPAASLNERATVDYIISEGLYNFHLFKDEEERKKKVKDIIHEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKDLGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERKKVLKVYDAAQHDYSVDKPEMVEIRPGHFVWANKAEVEKYKKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=61683 SANR_RS08645 WP_003031730.1 1764917..1765840(-) (amiF) [Streptococcus anginosus C238]
ATGCCTGAAAAATTAGTAGAAGTTAAAGATTTGGAAATTTCTTTCGGTGAGGGAAGCAAGAAATTTGTTGCTGTTAAAAA
TGCTAATTTCTTTATCAATAAAGGAGAAACGTTTTCACTTGTAGGAGAATCTGGTTCTGGTAAAACGACAATTGGTCGTG
CGATTATTGGTTTAAATGATACGAGTCATGGAGAGATTTTCTTTGAAGGGAAAAAAATCAATGGCAAAAAATCAAAAGAA
GAAGAGTCAGAAATCATTCGTAAAATTCAAATGATTTTCCAAGACCCTGCTGCTAGTTTGAATGAACGTGCGACAGTTGA
TTATATCATTTCGGAAGGCTTGTATAATTTCCATTTATTTAAAGATGAAGAAGAACGCAAGAAAAAAGTGAAAGATATTA
TTCATGAAGTTGGATTGTTATCAGAGCATTTAACACGTTACCCGCATGAATTTTCTGGTGGTCAACGTCAGCGGATTGGG
ATTGCCCGTGCGCTTGTTATGGAACCAGATTTTGTCATTGCAGATGAGCCGATTTCAGCTTTGGACGTGTCTGTGCGCGC
GCAAGTTTTGAATCTTCTTAAGAAATTCCAAAAAGATCTAGGTTTGACCTATCTTTTCATTGCCCATGATTTATCAGTTG
TACGTTTTATCTCAGACCGTATTGCTGTTATTTATAAGGGTGTGATTGTAGAAGTGGCTGAAACAGAAGAACTCTTCAAT
AATCCAATCCATCCTTATACGCAGTCATTGCTATCTGCTGTCCCAATTCCAGACCCAATATTGGAGCGGAAGAAAGTATT
GAAGGTTTATGATGCTGCTCAACATGATTATTCAGTAGATAAGCCAGAAATGGTTGAAATTCGTCCAGGACACTTTGTCT
GGGCTAATAAAGCAGAAGTTGAAAAGTATAAAAAAGAATTGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0SFK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

87.908

99.674

0.876
  amiF Streptococcus salivarius strain HSISS4

87.908

99.674

0.876
  amiF Streptococcus thermophilus LMD-9

87.582

99.674

0.873

Multiple sequence alignment