Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   LIN98_RS05550 Genome accession   NZ_CP085096
Coordinates   1079517..1079846 (-) Length   109 a.a.
NCBI ID   WP_005548420.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 4S     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1074517..1084846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN98_RS05525 serA 1075274..1076506 (-) 1233 WP_249856078.1 phosphoglycerate dehydrogenase -
  LIN98_RS05530 rpiA 1076525..1077181 (-) 657 WP_005539288.1 ribose-5-phosphate isomerase RpiA -
  LIN98_RS05535 hemW 1077280..1078449 (-) 1170 WP_014167851.1 radical SAM family heme chaperone HemW -
  LIN98_RS05540 - 1078449..1078772 (-) 324 WP_005589878.1 YbjQ family protein -
  LIN98_RS05545 - 1078811..1079404 (-) 594 WP_005571888.1 XTP/dITP diphosphatase -
  LIN98_RS05550 comE1/comEA 1079517..1079846 (-) 330 WP_005548420.1 helix-hairpin-helix domain-containing protein Machinery gene
  LIN98_RS05555 hflC 1080136..1081023 (-) 888 WP_005548417.1 protease modulator HflC -
  LIN98_RS05560 hflK 1081023..1082276 (-) 1254 WP_005589874.1 FtsH protease activity modulator HflK -
  LIN98_RS05565 - 1082372..1083091 (-) 720 WP_025298444.1 4'-phosphopantetheinyl transferase superfamily protein -
  LIN98_RS05570 thrC 1083150..1084424 (-) 1275 WP_005568426.1 threonine synthase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11341.10 Da        Isoelectric Point: 9.6912

>NTDB_id=615532 LIN98_RS05550 WP_005548420.1 1079517..1079846(-) (comE1/comEA) [Aggregatibacter actinomycetemcomitans strain 4S]
MKAMKHLLASLFVLGSVFAGSAVAAEKAAEPAVQTEQPAATAAVGEKVNINTASAAEIQKALVGIGAKKAEAVVQYREKH
GNFSAVEQLLEVQGIGKATLEKNRDRIAL

Nucleotide


Download         Length: 330 bp        

>NTDB_id=615532 LIN98_RS05550 WP_005548420.1 1079517..1079846(-) (comE1/comEA) [Aggregatibacter actinomycetemcomitans strain 4S]
ATGAAAGCAATGAAACATCTTTTGGCTTCGCTGTTCGTGTTAGGTTCGGTGTTTGCGGGTTCTGCCGTGGCGGCGGAAAA
AGCGGCTGAACCGGCGGTACAAACGGAGCAGCCGGCGGCAACGGCAGCGGTCGGTGAGAAAGTGAATATTAACACCGCCA
GTGCTGCGGAAATTCAAAAAGCCCTTGTAGGCATCGGTGCGAAAAAAGCGGAAGCGGTGGTGCAGTATCGTGAAAAACAC
GGTAATTTCAGCGCCGTGGAGCAGTTGCTGGAAGTGCAGGGCATCGGCAAAGCGACCTTAGAAAAAAATCGCGACCGTAT
CGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

60.909

100

0.615
  comEA/comE1 Glaesserella parasuis strain SC1401

53.509

100

0.56
  comEA Vibrio parahaemolyticus RIMD 2210633

44.34

97.248

0.431
  comEA Acinetobacter baylyi ADP1

39.655

100

0.422
  comEA Vibrio cholerae C6706

39.623

97.248

0.385
  comEA Vibrio cholerae strain A1552

39.623

97.248

0.385