Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SII_RS07600 Genome accession   NC_022237
Coordinates   1564559..1566538 (-) Length   659 a.a.
NCBI ID   WP_020999095.1    Uniprot ID   -
Organism   Streptococcus intermedius C270     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1559559..1571538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SII_RS07580 (SII_1493) amiF 1559753..1560676 (-) 924 WP_003074407.1 ATP-binding cassette domain-containing protein Regulator
  SII_RS07585 (SII_1494) amiE 1560687..1561754 (-) 1068 WP_009569325.1 ABC transporter ATP-binding protein Regulator
  SII_RS07590 (SII_1495) amiD 1561763..1562689 (-) 927 WP_003074404.1 oligopeptide ABC transporter permease OppC Regulator
  SII_RS07595 (SII_1496) amiC 1562689..1564185 (-) 1497 WP_003074402.1 ABC transporter permease Regulator
  SII_RS07600 (SII_1497) amiA3 1564559..1566538 (-) 1980 WP_020999095.1 peptide ABC transporter substrate-binding protein Regulator
  SII_RS07605 (SII_1498) amiA3 1566735..1568711 (-) 1977 WP_009569328.1 peptide ABC transporter substrate-binding protein Regulator
  SII_RS07610 (SII_1499) - 1568870..1569559 (-) 690 WP_020999096.1 B3/4 domain-containing protein -
  SII_RS07615 (SII_1500) - 1569782..1571395 (-) 1614 WP_020999097.1 CTP synthase -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 73316.03 Da        Isoelectric Point: 8.3426

>NTDB_id=61549 SII_RS07600 WP_020999095.1 1564559..1566538(-) (amiA3) [Streptococcus intermedius C270]
MKKSKIIALTAVALLATGTLAACSGSKAGSSNKTFSYVYEQDPDNLDYLTTGKASTSNITSNVIDGLLENDRHGNLIPSV
AKDWTVSKDGLTYTYKLRKGVKWYTSEGEEYAEVKAQDFVTGLKHAADKKSDAIYLVQDSIKGLDAYMKGENKDFSAVGI
KAVDDYTVQYTLNRPESFWNSKTTMGVLAPVNAEFLKSKGNKFAQATDPSSILYNGPYLLKSITAKSSVEFAKNPNYWDK
KNVHIDHIKLSYYDGQDQDKLAKGFSDGSFTNAKVFPTSPSYASVSKKYKNNIVYTPQDATTYLVATNIDRQSYNHTSKT
TDAQKTSTKKALLNKDFRQAITFAFDRTAYASQVNGKDGATKMLRNLFVPPTFVQTDDKNFGELVKEKLVAYDESWKDVN
LNDAQDGLYNPTKAKEKLAKAKAALQADGVQFPIHIDMPVDQTATNKVQRVQSLKQSIEKNLGKENVVIDIQQMSKDDVN
NITYFAESAAAEDWDLSDNVGWSPDFQDPSTYLDVIKPSSGENTKTYLGFDSGKNNAAAAQVGMNEYEKLLNEAEKETTN
TNARYEKYAAAQAWLTDNALVIPTTTLTGRPILSRTVPFTNPFAWSGNKGNSEIILYKYLELQDEPVTQDQYKKAMTKWN
KERSKSNKKAQEELADHIK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=61549 SII_RS07600 WP_020999095.1 1564559..1566538(-) (amiA3) [Streptococcus intermedius C270]
ATGAAGAAAAGTAAAATCATTGCCTTAACGGCTGTTGCCTTACTCGCGACGGGGACATTAGCGGCTTGTTCTGGTTCTAA
AGCAGGTTCTAGTAACAAAACGTTTTCGTATGTTTATGAACAAGATCCGGATAATCTAGATTATCTGACAACTGGGAAGG
CCTCTACTTCAAACATTACAAGTAACGTCATTGATGGCCTCTTGGAAAATGACCGTCATGGGAACTTAATTCCTTCTGTG
GCAAAAGATTGGACCGTCTCTAAAGACGGCTTGACTTACACTTACAAACTTCGCAAGGGAGTTAAATGGTATACTTCAGA
AGGGGAAGAGTATGCAGAAGTTAAAGCGCAAGACTTTGTGACAGGTTTGAAACACGCTGCAGATAAGAAATCCGATGCCA
TTTATTTGGTGCAAGATTCCATTAAAGGTTTGGATGCTTATATGAAAGGTGAAAATAAAGATTTCTCTGCTGTTGGTATT
AAAGCAGTTGATGATTATACCGTCCAATACACGCTTAATCGACCAGAAAGCTTTTGGAACTCGAAAACAACAATGGGAGT
TTTAGCACCAGTTAATGCAGAATTTTTGAAATCAAAAGGCAATAAATTTGCGCAAGCAACAGATCCATCTAGTATTCTTT
ATAATGGACCTTACTTGCTAAAATCTATCACAGCGAAATCATCTGTTGAATTTGCTAAAAATCCAAACTATTGGGATAAG
AAAAATGTGCACATTGATCACATCAAGTTATCTTACTATGATGGTCAGGATCAGGATAAACTGGCTAAAGGATTTAGCGA
TGGCTCATTTACCAATGCCAAAGTATTTCCAACCAGTCCAAGTTATGCTTCTGTCAGCAAGAAATACAAAAACAACATCG
TTTATACTCCACAAGATGCAACCACTTATCTAGTGGCTACAAACATTGATCGTCAATCTTACAATCATACATCAAAGACA
ACAGATGCTCAAAAGACATCTACTAAGAAAGCATTATTGAATAAAGATTTCCGTCAAGCAATTACCTTTGCATTTGACCG
TACTGCTTATGCTTCACAGGTGAATGGTAAAGACGGTGCGACGAAGATGCTTCGTAATCTCTTTGTACCGCCAACTTTTG
TTCAAACAGATGATAAGAACTTTGGAGAATTGGTCAAAGAAAAATTAGTTGCTTACGATGAAAGTTGGAAAGATGTCAAT
TTAAATGATGCGCAAGACGGGCTTTACAATCCAACGAAAGCCAAGGAAAAATTAGCTAAAGCCAAAGCAGCGCTTCAAGC
AGACGGTGTTCAATTCCCGATTCACATTGATATGCCAGTTGACCAAACGGCAACGAATAAAGTTCAACGTGTACAATCAT
TGAAACAATCGATTGAAAAGAATCTTGGCAAAGAAAATGTTGTGATTGACATTCAACAAATGTCTAAAGACGATGTAAAT
AATATCACTTACTTTGCTGAATCTGCTGCTGCAGAGGATTGGGATCTTTCAGACAATGTTGGTTGGAGTCCAGATTTCCA
AGATCCATCTACTTATCTTGATGTCATCAAGCCTTCAAGTGGTGAAAATACTAAGACTTATCTAGGATTTGATTCAGGTA
AAAATAATGCTGCTGCGGCACAAGTTGGTATGAATGAATATGAAAAATTACTGAATGAGGCCGAAAAAGAAACCACTAAT
ACGAATGCACGCTATGAAAAATATGCTGCAGCCCAAGCTTGGTTGACTGATAATGCTTTGGTTATTCCGACAACAACCTT
GACTGGTCGTCCAATTCTTTCTCGCACAGTGCCATTTACTAATCCATTTGCTTGGTCAGGAAACAAAGGGAATAGTGAAA
TCATTCTATATAAGTATCTTGAACTCCAAGATGAGCCTGTTACACAAGATCAGTACAAGAAAGCTATGACTAAATGGAAT
AAAGAGCGATCAAAATCTAATAAAAAAGCTCAAGAAGAACTTGCAGATCATATTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

61.515

100

0.616
  amiA3 Streptococcus thermophilus LMG 18311

60.909

100

0.61
  amiA Streptococcus salivarius strain HSISS4

60.606

100

0.607

Multiple sequence alignment