Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   SII_RS07595 Genome accession   NC_022237
Coordinates   1562689..1564185 (-) Length   498 a.a.
NCBI ID   WP_003074402.1    Uniprot ID   T1ZGK9
Organism   Streptococcus intermedius C270     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1557689..1569185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SII_RS07570 (SII_1491) - 1557757..1558722 (+) 966 WP_003074411.1 LacI family DNA-binding transcriptional regulator -
  SII_RS07575 (SII_1492) - 1558808..1559626 (-) 819 WP_009569324.1 Cof-type HAD-IIB family hydrolase -
  SII_RS07580 (SII_1493) amiF 1559753..1560676 (-) 924 WP_003074407.1 ATP-binding cassette domain-containing protein Regulator
  SII_RS07585 (SII_1494) amiE 1560687..1561754 (-) 1068 WP_009569325.1 ABC transporter ATP-binding protein Regulator
  SII_RS07590 (SII_1495) amiD 1561763..1562689 (-) 927 WP_003074404.1 oligopeptide ABC transporter permease OppC Regulator
  SII_RS07595 (SII_1496) amiC 1562689..1564185 (-) 1497 WP_003074402.1 ABC transporter permease Regulator
  SII_RS07600 (SII_1497) amiA3 1564559..1566538 (-) 1980 WP_020999095.1 peptide ABC transporter substrate-binding protein Regulator
  SII_RS07605 (SII_1498) amiA3 1566735..1568711 (-) 1977 WP_009569328.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55912.09 Da        Isoelectric Point: 10.0131

>NTDB_id=61548 SII_RS07595 WP_003074402.1 1562689..1564185(-) (amiC) [Streptococcus intermedius C270]
MKKYIFMRILRSLVSIFMVTTLTYTIIYTMVPRKLIFKQDPNYNKIATTPDKKTNYENTIFERMGYIDYYDTKELQEKAS
KENPSVTVEPTNANKKIYEAYIKKLGRGWKLQQFKESKQFYATREVPVYERVLGFYGNLIQIDHTGAVKDASNPNLKRYL
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFIHQNFVRLNLGTSYPTYANLPVLQVISQGQGQTQTSEVQFPTGKKTSSV
NIYTRTYKSPKHADVRDVANYGKDDPYTATESNYQYPSMLVSSSIVGLIGLALSYLIAVPLGSYMARFKNTLFDSISTGA
LTFLMSLPTIALVYIIRLIGSAIGLPDSFPILGAGDWRSYVLPAVILGLLSAPWTAVWIRRYMIDLQSQDFVRFARAKGL
SEQEISNKHIFKNAMVPLVSSIPGAIIGVITGATLTETIFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCLSIFALLLGD
ILMTMLDPRIKLTSKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=61548 SII_RS07595 WP_003074402.1 1562689..1564185(-) (amiC) [Streptococcus intermedius C270]
ATGAAGAAATATATTTTTATGCGTATCTTACGCTCTTTAGTATCTATTTTCATGGTAACAACATTGACTTACACCATTAT
CTATACTATGGTGCCAAGAAAGTTGATTTTTAAACAGGATCCAAACTATAATAAAATAGCTACAACTCCTGATAAAAAGA
CTAATTATGAAAATACAATTTTTGAGCGTATGGGTTACATTGACTACTATGATACGAAGGAATTACAAGAAAAAGCTAGT
AAAGAGAATCCTTCTGTAACAGTAGAACCTACTAATGCAAATAAAAAAATCTATGAAGCTTACATCAAAAAGTTGGGGCG
TGGTTGGAAATTGCAGCAATTCAAAGAAAGTAAGCAATTTTATGCAACTCGAGAGGTTCCGGTTTATGAACGCGTTCTTG
GTTTTTATGGTAATTTGATTCAAATTGATCATACAGGGGCTGTGAAAGATGCTTCTAATCCAAACTTGAAGCGTTATCTT
CGTATTGAAAATGATCCTGCTATTGGTTGGTCTGTTGTTGGTTCTGGAACGAAACATAAATACTTGTTATATTTCAACAG
TCAATTTCCATTTATCCATCAAAATTTTGTAAGATTAAATTTGGGAACATCTTATCCAACCTATGCAAATCTTCCTGTTC
TACAAGTTATTTCACAAGGGCAAGGTCAAACGCAGACTTCAGAAGTTCAATTTCCAACAGGAAAGAAAACATCGTCTGTT
AATATTTACACGCGTACCTATAAGTCTCCAAAACACGCTGATGTGCGAGATGTTGCTAATTACGGGAAAGACGATCCTTA
TACAGCAACAGAAAGCAACTATCAGTATCCATCAATGCTTGTAAGTTCTTCAATTGTTGGTTTGATTGGTCTAGCATTGT
CTTACTTAATCGCTGTGCCGTTAGGCTCTTATATGGCTCGTTTTAAGAATACATTGTTTGACAGTATTTCAACTGGTGCT
TTGACTTTCTTAATGTCGCTACCAACCATTGCTTTGGTTTATATCATTCGCTTGATTGGTTCAGCAATAGGATTACCAGA
CTCCTTCCCTATTTTAGGTGCAGGAGATTGGCGTTCTTATGTGTTGCCAGCAGTCATTCTTGGACTGTTGAGTGCGCCTT
GGACTGCTGTTTGGATTCGCCGTTATATGATTGACCTGCAATCACAAGACTTTGTTCGTTTTGCTCGAGCAAAAGGTCTC
TCTGAACAAGAAATTTCAAATAAACATATTTTTAAAAACGCTATGGTACCACTTGTATCCAGCATACCTGGTGCTATTAT
TGGAGTTATCACAGGTGCAACCTTGACTGAAACAATTTTTGCTTTCCCTGGAATGGGTAAAATGCTGATTGACTCTGTCA
AAGCATCTAATAATTCTATGGTCGTTGGTCTTGTATTTATCTTTACATGTCTATCTATCTTTGCTCTTCTATTGGGTGAT
ATTCTGATGACCATGCTTGACCCACGTATTAAATTAACATCAAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T1ZGK9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

80.522

100

0.805
  amiC Streptococcus thermophilus LMG 18311

79.518

100

0.795
  amiC Streptococcus thermophilus LMD-9

79.317

100

0.793

Multiple sequence alignment