Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SII_RS07605 Genome accession   NC_022237
Coordinates   1566735..1568711 (-) Length   658 a.a.
NCBI ID   WP_009569328.1    Uniprot ID   A0AAE8G180
Organism   Streptococcus intermedius C270     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1561735..1573711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SII_RS07590 (SII_1495) amiD 1561763..1562689 (-) 927 WP_003074404.1 oligopeptide ABC transporter permease OppC Regulator
  SII_RS07595 (SII_1496) amiC 1562689..1564185 (-) 1497 WP_003074402.1 ABC transporter permease Regulator
  SII_RS07600 (SII_1497) amiA3 1564559..1566538 (-) 1980 WP_020999095.1 peptide ABC transporter substrate-binding protein Regulator
  SII_RS07605 (SII_1498) amiA3 1566735..1568711 (-) 1977 WP_009569328.1 peptide ABC transporter substrate-binding protein Regulator
  SII_RS07610 (SII_1499) - 1568870..1569559 (-) 690 WP_020999096.1 B3/4 domain-containing protein -
  SII_RS07615 (SII_1500) - 1569782..1571395 (-) 1614 WP_020999097.1 CTP synthase -
  SII_RS07620 (SII_1501) rpoE 1571638..1572225 (-) 588 WP_020999098.1 DNA-directed RNA polymerase subunit delta -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72184.94 Da        Isoelectric Point: 9.2806

>NTDB_id=61550 SII_RS07605 WP_009569328.1 1566735..1568711(-) (amiA3) [Streptococcus intermedius C270]
MKKGKIIAVAGLALLTSGLLAACSGSKSNSAETKFGYVYSGDPETLDYVTSGKATTSDLVTNGVDGLLENDKYGNLVPSM
AKSWTVSKDGLTYTYKLRKGAKWYTSEGEEYAEVKAQDFVTGLKHAADKKSEALYLVQNSIKGLDAYVNGQTKDFSTVGV
KAVDDYTVQYTLNKPEPYWNSKTTSAIMWPINAEFLKSKGNKFGQSTDPNSILYNGPFLMKAITAKSAVEYVKNKHYWDK
DKVKVDKIKLAYYDGQDQDSLARNFKDGAYSYARLFPTSSNFATFEKQFKDNIYTAEAGAGTAALALNIDRQSYKHTAKK
TDEQKNSTKKALLNKDFRQALNFALDRESYAAQVNGKAGAATAIRNMFVPSNFVQVGEKSFGDAVEEKLASYGDTWKGVK
LADSQNGLYNPTKAKEKFAKAKAALQAQGVQFPIHLDVPTVETSKSYVARMQSLKQSVEKVLGKENVVMDLNMMSEDDFN
NITYYAPNAAGEDWDISGAVGWSPDYQDPSTYLDILKSTASDNTKTWFGFDSGSENAGAKAVGLDEYNKLVDEAGAETTD
IAKRYEKYAAAQAWLTDSSLVLPTMASTGAGTFVSRIQPFSGAFAQTGSKGSSTYYKYIKVGKDAVTKKDYEAAKKKWQK
EKAESNKKAQDKLADHVK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=61550 SII_RS07605 WP_009569328.1 1566735..1568711(-) (amiA3) [Streptococcus intermedius C270]
ATGAAAAAAGGTAAAATCATCGCAGTTGCGGGGTTAGCTCTTTTAACTTCTGGCCTTTTAGCTGCTTGCTCGGGTTCGAA
ATCGAACTCCGCTGAAACCAAGTTCGGTTATGTGTATTCTGGTGATCCAGAAACTTTGGATTACGTAACATCAGGAAAAG
CAACTACTAGCGATCTTGTGACAAATGGAGTTGACGGATTGTTAGAAAATGACAAATATGGAAATCTTGTACCATCAATG
GCTAAGTCATGGACTGTATCAAAAGATGGTTTAACCTATACTTATAAACTTCGTAAGGGTGCCAAATGGTACACATCAGA
AGGTGAAGAGTATGCTGAAGTCAAGGCGCAAGATTTTGTAACTGGACTGAAACATGCTGCCGATAAAAAATCTGAAGCTC
TTTATTTGGTTCAAAATTCAATTAAAGGTTTAGATGCTTACGTGAATGGTCAAACAAAAGATTTTTCAACAGTAGGTGTG
AAAGCAGTTGATGACTATACTGTTCAGTATACATTGAACAAGCCAGAACCATATTGGAATTCTAAGACAACCTCTGCCAT
TATGTGGCCAATCAATGCCGAATTTTTGAAATCTAAAGGAAATAAATTTGGCCAATCAACAGATCCTAACTCTATCCTTT
ATAATGGGCCATTCCTGATGAAAGCTATTACAGCGAAATCTGCGGTAGAATATGTTAAAAATAAACATTATTGGGATAAA
GATAAAGTAAAAGTTGATAAGATTAAACTTGCTTACTATGATGGGCAAGACCAAGACTCTCTTGCGCGTAACTTTAAAGA
TGGAGCTTACTCTTATGCTCGTCTCTTCCCAACAAGCTCAAACTTTGCAACTTTTGAAAAGCAGTTCAAAGATAATATCT
ATACTGCAGAAGCAGGTGCAGGAACAGCAGCTTTAGCATTGAATATCGATCGTCAATCATACAAGCATACTGCCAAAAAG
ACAGATGAGCAAAAGAATTCAACGAAAAAAGCATTGTTGAACAAAGACTTCCGCCAAGCGCTAAACTTTGCACTGGATCG
TGAATCTTACGCAGCACAAGTCAATGGTAAAGCTGGAGCTGCCACAGCAATCCGCAATATGTTTGTGCCATCTAACTTTG
TTCAAGTTGGTGAAAAATCATTTGGTGATGCTGTAGAAGAAAAATTAGCGAGCTATGGTGATACATGGAAGGGTGTTAAA
TTAGCTGATTCACAAAACGGCTTGTACAATCCAACAAAAGCAAAAGAAAAATTTGCAAAAGCAAAAGCAGCTTTGCAAGC
TCAAGGTGTACAGTTCCCAATCCACTTAGATGTTCCTACTGTGGAAACTTCTAAGAGCTATGTTGCTCGGATGCAGTCTT
TGAAACAATCTGTTGAAAAAGTACTTGGCAAAGAAAATGTTGTCATGGACTTGAATATGATGTCAGAAGACGACTTTAAT
AACATCACTTACTATGCTCCAAACGCAGCTGGAGAAGACTGGGATATTTCAGGTGCTGTTGGTTGGAGTCCTGATTATCA
AGATCCATCTACTTATCTTGATATTTTGAAATCAACGGCTTCTGATAATACGAAGACATGGTTTGGATTTGACTCTGGTA
GTGAAAATGCTGGTGCTAAAGCAGTTGGCTTGGACGAATATAATAAATTAGTCGATGAAGCAGGTGCAGAAACAACAGAC
ATTGCAAAACGTTATGAAAAATATGCAGCAGCACAAGCTTGGTTAACAGACAGTTCACTTGTCTTACCAACAATGGCTTC
AACAGGTGCCGGAACTTTTGTGTCACGCATTCAACCGTTCTCAGGTGCATTTGCGCAAACAGGTAGTAAAGGTAGCTCAA
CCTACTATAAATACATTAAAGTCGGTAAAGATGCTGTCACGAAGAAAGACTATGAAGCAGCTAAGAAGAAATGGCAAAAA
GAAAAAGCCGAATCTAATAAAAAAGCTCAAGATAAATTAGCTGATCATGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

64.036

100

0.641
  amiA3 Streptococcus thermophilus LMG 18311

63.733

100

0.638
  amiA Streptococcus salivarius strain HSISS4

62.766

100

0.628

Multiple sequence alignment