Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   SII_RS07580 Genome accession   NC_022237
Coordinates   1559753..1560676 (-) Length   307 a.a.
NCBI ID   WP_003074407.1    Uniprot ID   -
Organism   Streptococcus intermedius C270     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1554753..1565676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SII_RS07565 (SII_1490) - 1556322..1557776 (+) 1455 WP_020999094.1 sucrose-6-phosphate hydrolase -
  SII_RS07570 (SII_1491) - 1557757..1558722 (+) 966 WP_003074411.1 LacI family DNA-binding transcriptional regulator -
  SII_RS07575 (SII_1492) - 1558808..1559626 (-) 819 WP_009569324.1 Cof-type HAD-IIB family hydrolase -
  SII_RS07580 (SII_1493) amiF 1559753..1560676 (-) 924 WP_003074407.1 ATP-binding cassette domain-containing protein Regulator
  SII_RS07585 (SII_1494) amiE 1560687..1561754 (-) 1068 WP_009569325.1 ABC transporter ATP-binding protein Regulator
  SII_RS07590 (SII_1495) amiD 1561763..1562689 (-) 927 WP_003074404.1 oligopeptide ABC transporter permease OppC Regulator
  SII_RS07595 (SII_1496) amiC 1562689..1564185 (-) 1497 WP_003074402.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34811.89 Da        Isoelectric Point: 6.1198

>NTDB_id=61545 SII_RS07580 WP_003074407.1 1559753..1560676(-) (amiF) [Streptococcus intermedius C270]
MSEKLVEVKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNNTSKGDIFFDGKRINGKKSKE
EESEIIRKIQMIFQDPAASLNERATVDYIISEGLYNFHLFKDEEERQKKVKDIIHEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKDLGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERKKVLKVYDADQHDYSVDKPEMVEIRPGHFVWANKAEVEKYNKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=61545 SII_RS07580 WP_003074407.1 1559753..1560676(-) (amiF) [Streptococcus intermedius C270]
ATGTCTGAAAAATTAGTAGAAGTTAAAGATTTGGAGATTTCCTTCGGAGAAGGAAGCAAGAAATTTGTTGCTGTTAAAAA
TGCTAATTTCTTTATCAATAAAGGAGAAACGTTTTCGCTTGTAGGAGAGTCCGGTTCTGGTAAAACAACAATCGGACGCG
CGATTATTGGTTTGAATAATACTAGTAAGGGAGATATCTTCTTTGATGGAAAAAGAATCAATGGTAAGAAATCAAAAGAA
GAAGAATCAGAAATCATTCGCAAAATTCAGATGATTTTCCAAGATCCTGCTGCTAGTTTGAATGAACGTGCGACGGTTGA
TTACATTATTTCAGAAGGTCTGTATAATTTCCATCTGTTTAAAGATGAAGAAGAACGTCAGAAAAAAGTAAAAGATATTA
TTCATGAGGTAGGGCTGTTGTCAGAGCATTTAACTCGCTATCCGCATGAATTCTCGGGTGGTCAGCGTCAGCGGATTGGG
ATTGCTCGTGCGCTTGTTATGGAACCAGACTTTGTGATTGCCGATGAGCCAATTTCAGCACTTGACGTGTCTGTTCGTGC
TCAAGTTTTAAATCTTCTTAAGAAATTCCAAAAAGATCTGGGCTTGACCTATCTTTTCATTGCTCATGACCTTTCTGTAG
TGCGTTTTATCTCAGATCGGATTGCTGTTATTTATAAGGGAGTGATTGTTGAAGTTGCTGAAACCGAAGAACTCTTCAAT
AATCCAATCCATCCTTATACTCAGTCTTTATTGTCAGCTGTCCCAATTCCGGATCCGATTTTGGAACGGAAGAAAGTGTT
GAAAGTCTACGATGCTGATCAACATGATTATTCAGTAGATAAGCCAGAAATGGTTGAAATTCGTCCGGGGCACTTTGTCT
GGGCTAATAAAGCAGAAGTTGAAAAGTATAATAAGGAATTATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

86.601

99.674

0.863
  amiF Streptococcus salivarius strain HSISS4

86.601

99.674

0.863
  amiF Streptococcus thermophilus LMD-9

86.275

99.674

0.86

Multiple sequence alignment