Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   LIN96_RS08115 Genome accession   NZ_CP085090
Coordinates   1628308..1628637 (+) Length   109 a.a.
NCBI ID   WP_005548420.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 31R     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1623308..1633637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN96_RS08095 thrC 1623730..1625004 (+) 1275 WP_005568426.1 threonine synthase -
  LIN96_RS08100 - 1625063..1625782 (+) 720 WP_025298444.1 4'-phosphopantetheinyl transferase superfamily protein -
  LIN96_RS08105 hflK 1625878..1627131 (+) 1254 WP_005589874.1 FtsH protease activity modulator HflK -
  LIN96_RS08110 hflC 1627131..1628018 (+) 888 WP_005568420.1 protease modulator HflC -
  LIN96_RS08115 comE1/comEA 1628308..1628637 (+) 330 WP_005548420.1 helix-hairpin-helix domain-containing protein Machinery gene
  LIN96_RS08120 rdgB 1628750..1629343 (+) 594 WP_249847456.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  LIN96_RS08125 - 1629382..1629705 (+) 324 WP_005568416.1 YbjQ family protein -
  LIN96_RS08130 hemW 1629705..1630874 (+) 1170 WP_025298445.1 radical SAM family heme chaperone HemW -
  LIN96_RS08135 rpiA 1630973..1631629 (+) 657 WP_005539288.1 ribose-5-phosphate isomerase RpiA -
  LIN96_RS08140 serA 1631648..1632880 (+) 1233 WP_005568413.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11341.10 Da        Isoelectric Point: 9.6912

>NTDB_id=615390 LIN96_RS08115 WP_005548420.1 1628308..1628637(+) (comE1/comEA) [Aggregatibacter actinomycetemcomitans strain 31R]
MKAMKHLLASLFVLGSVFAGSAVAAEKAAEPAVQTEQPAATAAVGEKVNINTASAAEIQKALVGIGAKKAEAVVQYREKH
GNFSAVEQLLEVQGIGKATLEKNRDRIAL

Nucleotide


Download         Length: 330 bp        

>NTDB_id=615390 LIN96_RS08115 WP_005548420.1 1628308..1628637(+) (comE1/comEA) [Aggregatibacter actinomycetemcomitans strain 31R]
ATGAAAGCAATGAAACATCTTTTGGCTTCGCTGTTCGTGTTAGGTTCGGTGTTTGCGGGTTCTGCCGTGGCGGCGGAAAA
AGCGGCTGAACCGGCGGTACAAACGGAGCAGCCGGCGGCAACGGCAGCGGTCGGTGAGAAAGTGAATATTAACACCGCCA
GTGCTGCGGAAATTCAAAAAGCCCTTGTAGGCATCGGTGCGAAAAAAGCGGAAGCGGTGGTGCAGTATCGTGAAAAACAC
GGTAATTTCAGCGCCGTGGAGCAGTTGCTGGAAGTGCAGGGCATCGGCAAAGCGACCTTAGAAAAAAATCGCGACCGTAT
CGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

60.909

100

0.615
  comEA/comE1 Glaesserella parasuis strain SC1401

53.509

100

0.56
  comEA Vibrio parahaemolyticus RIMD 2210633

44.34

97.248

0.431
  comEA Acinetobacter baylyi ADP1

39.655

100

0.422
  comEA Vibrio cholerae C6706

39.623

97.248

0.385
  comEA Vibrio cholerae strain A1552

39.623

97.248

0.385