Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD/cglD   Type   Machinery gene
Locus tag   NQZ92_RS00800 Genome accession   NZ_CP102143
Coordinates   124600..125007 (+) Length   135 a.a.
NCBI ID   WP_014636753.1    Uniprot ID   -
Organism   Streptococcus suis strain DNR43     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 119600..130007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ92_RS00775 (NQZ92_00775) - 121001..121366 (+) 366 WP_002936568.1 DUF1033 family protein -
  NQZ92_RS00780 (NQZ92_00780) - 121401..122351 (-) 951 WP_014636751.1 S66 peptidase family protein -
  NQZ92_RS00785 (NQZ92_00785) comGA 122437..123387 (+) 951 WP_002936562.1 competence type IV pilus ATPase ComGA Machinery gene
  NQZ92_RS00790 (NQZ92_00790) comGB 123299..124336 (+) 1038 WP_255195823.1 competence type IV pilus assembly protein ComGB Machinery gene
  NQZ92_RS00795 (NQZ92_00795) comGC 124338..124619 (+) 282 WP_002936550.1 competence type IV pilus major pilin ComGC Machinery gene
  NQZ92_RS00800 (NQZ92_00800) comGD/cglD 124600..125007 (+) 408 WP_014636753.1 competence type IV pilus minor pilin ComGD Machinery gene
  NQZ92_RS00805 (NQZ92_00805) comGE 124979..125272 (+) 294 WP_002936548.1 competence type IV pilus minor pilin ComGE Machinery gene
  NQZ92_RS00810 (NQZ92_00810) comGF/cglF 125259..125693 (+) 435 WP_002936547.1 competence type IV pilus minor pilin ComGF Machinery gene
  NQZ92_RS00815 (NQZ92_00815) comGG 125671..126081 (+) 411 WP_002936546.1 competence type IV pilus minor pilin ComGG -
  NQZ92_RS00820 (NQZ92_00820) comGH 126138..127091 (+) 954 WP_002936545.1 class I SAM-dependent methyltransferase Machinery gene
  NQZ92_RS00825 (NQZ92_00825) - 127141..128328 (+) 1188 WP_002936543.1 acetate kinase -
  NQZ92_RS00830 (NQZ92_00830) - 128643..129194 (+) 552 WP_226960615.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15326.63 Da        Isoelectric Point: 9.6573

>NTDB_id=615350 NQZ92_RS00800 WP_014636753.1 124600..125007(+) (comGD/cglD) [Streptococcus suis strain DNR43]
MLRRKNKAFTLFESLLTLLVVSFLAVSLSGTVQTVFRSVQEEIFLWEFEAIYKDSQKLAASFHQKVNLAIGGQEVTNGYQ
AVQVPRNIEVLEGKTITLEEDGGNSSLTKIRFRLSQKIVTYQLYIGSGRYKKTEE

Nucleotide


Download         Length: 408 bp        

>NTDB_id=615350 NQZ92_RS00800 WP_014636753.1 124600..125007(+) (comGD/cglD) [Streptococcus suis strain DNR43]
ATGCTACGGCGAAAAAATAAGGCTTTTACCCTGTTTGAAAGCCTGCTGACCTTGTTGGTTGTCAGTTTTTTAGCTGTTTC
CTTATCAGGAACAGTACAAACGGTCTTTCGGTCTGTTCAGGAAGAAATTTTTCTCTGGGAATTTGAGGCCATCTATAAAG
ACAGTCAGAAATTGGCAGCTAGTTTCCACCAAAAAGTGAACCTTGCTATCGGTGGACAGGAGGTTACAAATGGTTATCAG
GCTGTACAGGTACCCAGAAATATAGAAGTGTTGGAAGGGAAGACCATTACACTTGAAGAAGATGGTGGAAATTCTTCTCT
GACCAAGATTCGTTTTCGGCTTAGTCAAAAAATAGTCACGTATCAATTATATATAGGGAGTGGTCGCTATAAGAAAACAG
AAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD/cglD Streptococcus pneumoniae Rx1

46.512

95.556

0.444
  comGD/cglD Streptococcus pneumoniae D39

46.512

95.556

0.444
  comGD/cglD Streptococcus pneumoniae R6

46.512

95.556

0.444
  comGD/cglD Streptococcus pneumoniae TIGR4

46.512

95.556

0.444
  comGD Streptococcus gordonii str. Challis substr. CH1

47.244

94.074

0.444
  comGD/cglD Streptococcus mitis NCTC 12261

45.736

95.556

0.437
  comGD Streptococcus mutans UA140

45.736

95.556

0.437
  comGD Streptococcus mutans UA159

45.736

95.556

0.437
  comGD/cglD Streptococcus mitis SK321

44.961

95.556

0.43