Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   NQZ92_RS00805 Genome accession   NZ_CP102143
Coordinates   124979..125272 (+) Length   97 a.a.
NCBI ID   WP_002936548.1    Uniprot ID   -
Organism   Streptococcus suis strain DNR43     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 119979..130272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ92_RS00775 (NQZ92_00775) - 121001..121366 (+) 366 WP_002936568.1 DUF1033 family protein -
  NQZ92_RS00780 (NQZ92_00780) - 121401..122351 (-) 951 WP_014636751.1 S66 peptidase family protein -
  NQZ92_RS00785 (NQZ92_00785) comGA 122437..123387 (+) 951 WP_002936562.1 competence type IV pilus ATPase ComGA Machinery gene
  NQZ92_RS00790 (NQZ92_00790) comGB 123299..124336 (+) 1038 WP_255195823.1 competence type IV pilus assembly protein ComGB Machinery gene
  NQZ92_RS00795 (NQZ92_00795) comGC 124338..124619 (+) 282 WP_002936550.1 competence type IV pilus major pilin ComGC Machinery gene
  NQZ92_RS00800 (NQZ92_00800) comGD/cglD 124600..125007 (+) 408 WP_014636753.1 competence type IV pilus minor pilin ComGD Machinery gene
  NQZ92_RS00805 (NQZ92_00805) comGE 124979..125272 (+) 294 WP_002936548.1 competence type IV pilus minor pilin ComGE Machinery gene
  NQZ92_RS00810 (NQZ92_00810) comGF/cglF 125259..125693 (+) 435 WP_002936547.1 competence type IV pilus minor pilin ComGF Machinery gene
  NQZ92_RS00815 (NQZ92_00815) comGG 125671..126081 (+) 411 WP_002936546.1 competence type IV pilus minor pilin ComGG -
  NQZ92_RS00820 (NQZ92_00820) comGH 126138..127091 (+) 954 WP_002936545.1 class I SAM-dependent methyltransferase Machinery gene
  NQZ92_RS00825 (NQZ92_00825) - 127141..128328 (+) 1188 WP_002936543.1 acetate kinase -
  NQZ92_RS00830 (NQZ92_00830) - 128643..129194 (+) 552 WP_226960615.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10746.66 Da        Isoelectric Point: 10.2088

>NTDB_id=615351 NQZ92_RS00805 WP_002936548.1 124979..125272(+) (comGE) [Streptococcus suis strain DNR43]
MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDAGRRRQAWELEQQEVLNLAQMAVQTGQDNLALNGVTVQVQRTAD
KIIVFREGKEVLSVVKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=615351 NQZ92_RS00805 WP_002936548.1 124979..125272(+) (comGE) [Streptococcus suis strain DNR43]
GTGGTCGCTATAAGAAAACAGAAGAATAAGGCTTATATTTTGCTGGAAAGTCTGGTTGCCCTTGCGACCCTAGTGACTAT
TTGCAGCTTGATTTTATCAGCTGTGGATGCAGGTCGTAGGCGACAGGCTTGGGAATTGGAACAACAGGAGGTTCTCAATC
TAGCACAGATGGCTGTTCAGACCGGGCAAGATAACCTAGCCTTAAACGGTGTTACAGTTCAGGTTCAACGAACAGCGGAT
AAGATCATTGTTTTCCGCGAGGGAAAGGAGGTTTTATCGGTTGTTAAAAAGTAA

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

53.608

100

0.536
  comGE Streptococcus mutans UA159

53.608

100

0.536
  comGE/cglE Streptococcus pneumoniae Rx1

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae D39

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae R6

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae TIGR4

40.217

94.845

0.381
  comGE/cglE Streptococcus mitis SK321

39.13

94.845

0.371
  comGE/cglE Streptococcus mitis NCTC 12261

39.13

94.845

0.371