Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Regulator
Locus tag   NQZ84_RS07180 Genome accession   NZ_CP102094
Coordinates   1458495..1459856 (-) Length   453 a.a.
NCBI ID   WP_257048476.1    Uniprot ID   -
Organism   Streptococcus suis strain 12RC1     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1453495..1464856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ84_RS07145 (NQZ84_07145) - 1454004..1454594 (-) 591 WP_032498693.1 YitT family protein -
  NQZ84_RS07150 (NQZ84_07150) - 1454675..1455058 (-) 384 WP_002936200.1 PH domain-containing protein -
  NQZ84_RS07155 (NQZ84_07155) - 1455286..1456038 (+) 753 WP_044677455.1 hypothetical protein -
  NQZ84_RS07160 (NQZ84_07160) - 1456148..1456414 (-) 267 WP_044677454.1 hypothetical protein -
  NQZ84_RS07165 (NQZ84_07165) - 1456578..1456781 (-) 204 WP_044677453.1 hypothetical protein -
  NQZ84_RS07170 (NQZ84_07170) - 1457626..1458048 (-) 423 WP_024407031.1 hypothetical protein -
  NQZ84_RS07175 (NQZ84_07175) cipB 1458071..1458307 (-) 237 WP_024407030.1 Blp family class II bacteriocin Regulator
  NQZ84_RS07180 (NQZ84_07180) comB 1458495..1459856 (-) 1362 WP_257048476.1 bacteriocin secretion accessory protein Regulator
  NQZ84_RS07185 (NQZ84_07185) comA 1459866..1462016 (-) 2151 WP_044680882.1 peptide cleavage/export ABC transporter ComA Regulator
  NQZ84_RS07190 (NQZ84_07190) - 1462120..1462311 (-) 192 WP_044680883.1 hypothetical protein -
  NQZ84_RS07195 (NQZ84_07195) - 1462337..1462534 (-) 198 WP_044680884.1 hypothetical protein -
  NQZ84_RS07200 (NQZ84_07200) - 1462547..1462750 (-) 204 WP_044680885.1 hypothetical protein -
  NQZ84_RS07205 (NQZ84_07205) - 1462927..1463052 (-) 126 WP_141590538.1 bacteriocin -
  NQZ84_RS07210 (NQZ84_07210) - 1463063..1463206 (-) 144 WP_205029660.1 hypothetical protein -
  NQZ84_RS07215 (NQZ84_07215) - 1463455..1463679 (-) 225 WP_024379520.1 hypothetical protein -
  NQZ84_RS07220 (NQZ84_07220) - 1463692..1464396 (-) 705 WP_257048513.1 ParA family protein -
  NQZ84_RS07225 (NQZ84_07225) - 1464685..1464813 (+) 129 WP_257048491.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50582.53 Da        Isoelectric Point: 4.3979

>NTDB_id=614713 NQZ84_RS07180 WP_257048476.1 1458495..1459856(-) (comB) [Streptococcus suis strain 12RC1]
MYEELLESSEFYQKRYHNFSSKLILPVFALMVFLVVFLAFFKKEITLKSAATVEPVKVLAQVQSTSSNKIILNSLKENLV
VNIGDILIKYDSTTETLQQDNSEDQLSLLQKQKEQLELLKLSYETTTSQFPETDTFGYYRRFEYYLNQRQTLESSVSQQN
GTIASQNAASTNTQNTIGGFINELSGKISDYQALKSAISTGASIDSTNQGYSLYTTYISQSGTLTSDVEKDSLKNQTITQ
IDSQIQQFQSELSSYQIQYSSAGVQQSYNSSLDSQLSSLQSQKISEASQELTALEQKINELENGLEVQNNTLSDTEIVST
VAGIVHMNNEVLNAELIPEGTLIAQIYPIIADEKKVLIETYIPSSDISSLKVGDKIKFKTQDSSNKELNLISKISSIDSN
ATKTETGSYFKVVSEVKLSDKETQVLKYGTSGEIVVVTGEKTYLDYYLDKFLN

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=614713 NQZ84_RS07180 WP_257048476.1 1458495..1459856(-) (comB) [Streptococcus suis strain 12RC1]
ATGTACGAAGAATTACTAGAAAGTTCGGAATTTTATCAAAAACGGTATCATAATTTTTCAAGCAAATTGATCCTTCCAGT
ATTTGCTTTGATGGTTTTCTTGGTTGTATTTTTGGCATTCTTTAAAAAAGAAATCACTCTTAAAAGTGCTGCTACTGTAG
AGCCAGTAAAAGTATTAGCCCAGGTTCAATCAACCAGCAGCAACAAGATTATTTTAAATTCACTGAAGGAAAATCTTGTA
GTTAATATTGGTGATATCTTGATCAAGTACGATTCTACAACTGAGACGTTGCAACAAGATAACTCTGAAGATCAGTTGAG
TTTACTGCAAAAACAAAAAGAGCAGCTAGAGCTATTAAAATTGAGCTATGAGACAACTACTAGTCAGTTTCCAGAAACAG
ATACATTTGGTTACTATCGTAGGTTTGAGTATTACTTGAATCAACGACAAACACTAGAAAGTAGTGTTTCACAACAGAAT
GGAACAATTGCTTCACAGAACGCAGCATCGACGAATACTCAAAATACAATTGGTGGTTTTATCAATGAACTATCAGGTAA
AATATCTGATTATCAAGCGTTAAAGAGTGCTATTTCAACAGGAGCATCGATTGATAGTACGAACCAAGGGTATTCATTGT
ATACTACCTATATTTCACAATCAGGGACATTAACGAGTGATGTAGAAAAGGACAGTCTAAAGAACCAAACGATTACTCAG
ATTGATTCACAAATCCAGCAATTTCAGTCAGAATTATCGAGTTATCAAATCCAATATTCTAGTGCTGGTGTTCAGCAATC
CTACAATTCCAGCTTAGATAGCCAACTTTCTTCTTTACAATCTCAAAAAATTTCAGAAGCAAGTCAAGAACTCACAGCTC
TGGAACAAAAAATTAATGAGTTGGAGAATGGATTAGAGGTCCAAAATAATACTCTTTCAGATACTGAAATTGTGTCTACT
GTTGCTGGAATTGTTCATATGAACAATGAGGTCCTTAATGCAGAATTGATTCCAGAAGGAACATTGATTGCTCAAATATA
CCCAATTATTGCGGATGAGAAAAAAGTTTTGATTGAGACCTATATTCCTTCGAGTGATATTTCTAGCCTTAAAGTAGGAG
ACAAGATTAAGTTTAAAACCCAGGATTCATCCAATAAAGAACTAAATCTTATTTCAAAAATCTCAAGTATAGATAGTAAT
GCCACTAAGACAGAGACAGGCAGCTACTTTAAGGTTGTTTCAGAGGTGAAACTTTCGGATAAGGAAACCCAGGTTCTGAA
ATATGGTACATCTGGAGAAATCGTTGTAGTAACTGGAGAGAAGACATATTTAGATTATTATTTAGATAAATTTTTAAATT
AA

Domains

Predicted by InterProScan.

HlyD family secretion protein ()

(317-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Streptococcus gordonii str. Challis substr. CH1

46.358

100

0.464
  comB Streptococcus mitis SK321

45.254

100

0.453
  comB Streptococcus mitis NCTC 12261

45.254

100

0.453
  comB Streptococcus pneumoniae R6

44.812

100

0.448
  comB Streptococcus pneumoniae Rx1

44.812

100

0.448
  comB Streptococcus pneumoniae D39

44.812

100

0.448
  comB Streptococcus pneumoniae TIGR4

44.592

100

0.446