Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LG289_RS17330 Genome accession   NZ_CP085014
Coordinates   3416531..3417025 (-) Length   164 a.a.
NCBI ID   WP_404335635.1    Uniprot ID   -
Organism   Planococcus rifietoensis strain SLM-623     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3411531..3422025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG289_RS17315 (LG289_17320) - 3411666..3413642 (-) 1977 WP_101192090.1 DHH family phosphoesterase -
  LG289_RS17320 (LG289_17325) - 3413657..3414610 (-) 954 WP_404335633.1 YybS family protein -
  LG289_RS17325 (LG289_17330) rpsR 3416241..3416477 (-) 237 WP_058382282.1 30S ribosomal protein S18 -
  LG289_RS17330 (LG289_17335) ssbA 3416531..3417025 (-) 495 WP_404335635.1 single-stranded DNA-binding protein Machinery gene
  LG289_RS17335 (LG289_17340) rpsF 3417077..3417364 (-) 288 WP_274844187.1 30S ribosomal protein S6 -
  LG289_RS17340 (LG289_17345) - 3417530..3418081 (+) 552 WP_404335638.1 DUF3267 domain-containing protein -
  LG289_RS17345 (LG289_17350) - 3418360..3418743 (-) 384 WP_101192093.1 gamma-glutamylcyclotransferase -
  LG289_RS17350 (LG289_17355) ychF 3418872..3419972 (-) 1101 WP_101192260.1 redox-regulated ATPase YchF -
  LG289_RS17355 (LG289_17360) - 3420053..3420253 (-) 201 WP_058382277.1 DUF951 domain-containing protein -
  LG289_RS17360 (LG289_17365) - 3420269..3421171 (-) 903 WP_404335641.1 mechanosensitive ion channel family protein -
  LG289_RS17365 (LG289_17370) - 3421194..3421907 (-) 714 WP_101192094.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17974.58 Da        Isoelectric Point: 4.9719

>NTDB_id=614555 LG289_RS17330 WP_404335635.1 3416531..3417025(-) (ssbA) [Planococcus rifietoensis strain SLM-623]
MINRVVLVGRLTKDPDLRYTPSGAAVARFTLAVNRTFSNAQGEREADFINCTVWRKQAENTANFLKKGSLAGVEGRIQTG
SYEGQDGKRIYTTEVVADSVQFLEPKSANSGSGDRSNDRSYGQQPSYQQNQPSSPSQQNNTRVDDDPFSSGSGKIEVSDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=614555 LG289_RS17330 WP_404335635.1 3416531..3417025(-) (ssbA) [Planococcus rifietoensis strain SLM-623]
ATGATCAACCGGGTTGTATTGGTCGGAAGACTGACAAAAGATCCTGATCTTCGCTACACACCAAGCGGGGCGGCGGTGGC
TCGTTTTACACTTGCTGTAAACCGGACATTCTCCAATGCGCAAGGTGAACGCGAAGCAGATTTTATCAATTGTACCGTTT
GGCGCAAGCAGGCTGAAAACACAGCGAATTTCCTCAAAAAAGGAAGTCTCGCCGGTGTCGAAGGCCGCATTCAGACTGGC
AGCTACGAGGGTCAAGATGGCAAGCGCATTTATACGACGGAAGTGGTGGCAGACAGCGTTCAATTCCTTGAACCGAAAAG
CGCCAACTCCGGATCTGGGGATCGTTCAAACGATCGCTCGTATGGACAGCAGCCATCTTATCAACAGAACCAACCGTCTA
GTCCAAGTCAGCAAAACAACACTCGTGTAGATGACGATCCGTTTTCAAGCGGAAGCGGGAAGATCGAAGTTTCGGACGAC
GATCTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.884

100

0.628
  ssb Latilactobacillus sakei subsp. sakei 23K

56.069

100

0.591
  ssbB Bacillus subtilis subsp. subtilis str. 168

67.925

64.634

0.439
  ssb Neisseria gonorrhoeae MS11

35.196

100

0.384
  ssb Vibrio cholerae strain A1552

33.702

100

0.372
  ssb Neisseria meningitidis MC58

34.483

100

0.366