Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   LG401_RS14375 Genome accession   NZ_CP084711
Coordinates   2815789..2816430 (-) Length   213 a.a.
NCBI ID   WP_060597210.1    Uniprot ID   -
Organism   Bacillus pumilus strain AR03     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2810789..2821430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG401_RS14340 (LG401_14340) - 2811900..2812331 (+) 432 WP_066030470.1 Na(+)/H(+) antiporter subunit B -
  LG401_RS14345 (LG401_14345) - 2812331..2812672 (+) 342 WP_066030469.1 Na(+)/H(+) antiporter subunit C -
  LG401_RS14350 (LG401_14350) - 2812665..2814143 (+) 1479 WP_066030468.1 Na+/H+ antiporter subunit D -
  LG401_RS14355 (LG401_14355) - 2814150..2814629 (+) 480 WP_066030467.1 Na+/H+ antiporter subunit E -
  LG401_RS14360 (LG401_14360) - 2814629..2814910 (+) 282 WP_012011105.1 Na(+)/H(+) antiporter subunit F1 -
  LG401_RS14365 (LG401_14365) mnhG 2814894..2815268 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  LG401_RS14370 (LG401_14370) - 2815376..2815765 (-) 390 WP_003213775.1 hotdog fold thioesterase -
  LG401_RS14375 (LG401_14375) comA 2815789..2816430 (-) 642 WP_060597210.1 response regulator transcription factor Regulator
  LG401_RS14380 (LG401_14380) - 2816511..2818822 (-) 2312 Protein_2783 ATP-binding protein -
  LG401_RS14385 (LG401_14385) comX 2818879..2819046 (-) 168 WP_081311380.1 competence pheromone ComX -
  LG401_RS14390 (LG401_14390) - 2819043..2819957 (-) 915 WP_081311379.1 polyprenyl synthetase family protein -
  LG401_RS14395 (LG401_14395) degQ 2820109..2820249 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  LG401_RS14400 (LG401_14400) - 2820755..2821108 (+) 354 WP_226509205.1 inner spore coat protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24139.58 Da        Isoelectric Point: 4.5688

>NTDB_id=612641 LG401_RS14375 WP_060597210.1 2815789..2816430(-) (comA) [Bacillus pumilus strain AR03]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQLVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=612641 LG401_RS14375 WP_060597210.1 2815789..2816430(-) (comA) [Bacillus pumilus strain AR03]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTCTAGAAACCAACCAACTAGTGAAAATTATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCCATTCGGGCTGGATTGCACGGTGCAATTAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACCGATCACGAGCTGTTAACAGAGCGAGAGTGTTTGATC
CTCAGAGAAGTGGAAAAAGGATACACGAACCAAGAGATTGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
CTTGACGTCCATCTTTAATAAGCTGAATGTTGGCTCTCGAACCGAAGCGGTGTTAATTGCAAAATCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718