Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   I6G24_RS14030 Genome accession   NZ_CP084189
Coordinates   902324..902728 (+) Length   134 a.a.
NCBI ID   WP_392390889.1    Uniprot ID   -
Organism   Lactococcus lactis strain FDAARGOS_867     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 897324..907728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G24_RS04705 (I6G24_04700) - 897515..898261 (-) 747 WP_003130666.1 bifunctional metallophosphatase/5'-nucleotidase -
  I6G24_RS04710 (I6G24_04705) - 898377..899396 (-) 1020 WP_023164065.1 DUF475 domain-containing protein -
  I6G24_RS04715 (I6G24_04710) - 899444..899941 (-) 498 WP_003130662.1 VanZ family protein -
  I6G24_RS04720 (I6G24_04715) - 900075..900704 (-) 630 WP_003130660.1 YigZ family protein -
  I6G24_RS04725 (I6G24_04720) - 900761..902081 (+) 1321 Protein_850 DEAD/DEAH box helicase -
  I6G24_RS14030 comFC 902324..902728 (+) 405 WP_392390889.1 ComF family protein Machinery gene
  I6G24_RS04730 (I6G24_04725) - 902762..903340 (-) 579 WP_003130655.1 nucleotidyltransferase family protein -
  I6G24_RS04735 (I6G24_04730) - 903354..903809 (-) 456 WP_003130653.1 diacylglycerol kinase family protein -
  I6G24_RS04740 (I6G24_04735) ybeY 903793..904281 (-) 489 WP_003130652.1 rRNA maturation RNase YbeY -
  I6G24_RS04745 (I6G24_04740) - 904433..904912 (-) 480 WP_003130650.1 NUDIX hydrolase -
  I6G24_RS04750 (I6G24_04745) - 904970..905938 (-) 969 WP_003130649.1 PhoH family protein -
  I6G24_RS04755 (I6G24_04750) - 906040..907572 (-) 1533 WP_003130647.1 Nramp family divalent metal transporter -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15682.11 Da        Isoelectric Point: 9.5359

>NTDB_id=609974 I6G24_RS14030 WP_392390889.1 902324..902728(+) (comFC) [Lactococcus lactis strain FDAARGOS_867]
MKDYFSQYKFVGDYRLYQIFEPYFKNISQKSPLVPIPISPKRLEERGFNQVTAFLQQDNFIELLEKENSVKQSSLNRKER
LESPNPFRLKKGLKVPTKVILIDDIYTTGTTLYHASQILKEAGVHEIRSFSLCC

Nucleotide


Download         Length: 405 bp        

>NTDB_id=609974 I6G24_RS14030 WP_392390889.1 902324..902728(+) (comFC) [Lactococcus lactis strain FDAARGOS_867]
ATGAAAGATTATTTTAGCCAGTATAAATTTGTTGGAGATTATCGATTATACCAAATTTTTGAGCCCTATTTTAAAAATAT
TTCCCAAAAATCTCCTTTGGTTCCAATTCCTATTTCACCAAAAAGATTAGAGGAACGTGGTTTCAATCAAGTGACTGCTT
TTCTTCAACAAGATAATTTTATTGAACTTCTTGAAAAAGAGAATTCGGTCAAACAATCTAGCCTTAATCGAAAAGAACGA
TTGGAAAGTCCAAATCCTTTTCGATTAAAAAAAGGGCTAAAAGTCCCTACAAAAGTTATATTAATTGACGATATTTATAC
AACAGGTACCACCTTATATCACGCATCACAAATTCTAAAAGAAGCTGGTGTTCATGAAATAAGGAGCTTTTCTCTCTGCT
GTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(91-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Lactococcus lactis subsp. cremoris KW2

67.669

99.254

0.672
  comFC/cflB Streptococcus mitis NCTC 12261

45.985

100

0.47
  comFC/cflB Streptococcus mitis SK321

45.985

100

0.47
  comFC/cflB Streptococcus pneumoniae TIGR4

43.796

100

0.448
  comFC/cflB Streptococcus pneumoniae Rx1

43.796

100

0.448
  comFC/cflB Streptococcus pneumoniae D39

43.796

100

0.448
  comFC/cflB Streptococcus pneumoniae R6

43.796

100

0.448
  comFC Bacillus subtilis subsp. subtilis str. 168

38.028

100

0.403
  comFC Latilactobacillus sakei subsp. sakei 23K

39.231

97.015

0.381