Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   Dongsha4_RS13550 Genome accession   NZ_CP084098
Coordinates   3158576..3158941 (-) Length   121 a.a.
NCBI ID   WP_330202885.1    Uniprot ID   -
Organism   Cyanobacterium sp. Dongsha4     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3153576..3163941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Dongsha4_RS13535 (Dongsha4_13530) - 3154119..3154883 (-) 765 WP_330202882.1 MlaE family lipid ABC transporter permease subunit -
  Dongsha4_RS13540 (Dongsha4_13535) pilJ 3154971..3157727 (-) 2757 WP_330202883.1 methyl-accepting chemotaxis protein Machinery gene
  Dongsha4_RS13545 (Dongsha4_13540) - 3157793..3158329 (-) 537 WP_330202884.1 chemotaxis protein CheW -
  Dongsha4_RS13550 (Dongsha4_13545) pilH 3158576..3158941 (-) 366 WP_330202885.1 response regulator Machinery gene
  Dongsha4_RS13555 (Dongsha4_13550) hpnH 3159132..3160145 (-) 1014 WP_330202886.1 adenosyl-hopene transferase HpnH -
  Dongsha4_RS13560 (Dongsha4_13555) murA 3160231..3161493 (-) 1263 WP_330205441.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  Dongsha4_RS13565 (Dongsha4_13560) ruvX 3162248..3162679 (-) 432 WP_330202887.1 Holliday junction resolvase RuvX -
  Dongsha4_RS13570 (Dongsha4_13565) pgsA 3162717..3163259 (-) 543 WP_330202888.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13710.13 Da        Isoelectric Point: 7.7809

>NTDB_id=609527 Dongsha4_RS13550 WP_330202885.1 3158576..3158941(-) (pilH) [Cyanobacterium sp. Dongsha4]
MSTVLLVEDSIPTRKMIAEILTKQGFNVEVATDGIQALEVLPNLRPDLVILDIIMPKMNGYEVCRKIKSDPQTKDVPVII
CSSKGEDFDRYWGIKQGADAYIAKPFREKELIATIKQFLKR

Nucleotide


Download         Length: 366 bp        

>NTDB_id=609527 Dongsha4_RS13550 WP_330202885.1 3158576..3158941(-) (pilH) [Cyanobacterium sp. Dongsha4]
ATGAGTACAGTGTTACTTGTCGAAGACAGTATCCCGACAAGAAAAATGATTGCCGAAATATTAACCAAACAAGGTTTTAA
CGTAGAGGTAGCTACTGACGGGATTCAAGCCTTAGAGGTATTACCTAATCTTCGTCCTGATTTGGTCATATTAGATATTA
TCATGCCTAAAATGAACGGTTATGAAGTGTGTCGTAAAATAAAATCAGATCCCCAAACTAAAGATGTTCCCGTAATTATT
TGCTCATCTAAAGGAGAAGATTTCGATCGCTATTGGGGTATAAAACAAGGAGCAGATGCTTACATAGCCAAACCTTTCAG
AGAAAAAGAATTAATTGCTACTATTAAACAATTTTTAAAAAGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

66.667

99.174

0.661
  scnR Streptococcus mutans UA159

39.344

100

0.397
  micA Streptococcus pneumoniae Cp1015

38.017

100

0.38
  vicR Streptococcus mutans UA159

37.19

100

0.372
  pilL-C Synechocystis sp. PCC 6803

37.815

98.347

0.372