Detailed information NTG0608760

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: LCH18_RS08225
• Genome accession: NZ_CP083947
• Coordinates: 1725247..1726440 (-)
• Length: 397 a.a.
• NCBI ID: WP_184118533.1
• Uniprot ID: -
• Organism: Acinetobacter johnsonii strain CSUSB1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1720247..1731440

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LCH18_RS08210 (LCH18_08210)	-	1722286..1723314 (+)	1029	WP_004693238.1	AraC family transcriptional regulator	-
LCH18_RS08215 (LCH18_08215)	gcvH	1723386..1723760 (+)	375	WP_004693240.1	glycine cleavage system protein GcvH	-
LCH18_RS08220 (LCH18_08220)	-	1724021..1725199 (+)	1179	WP_224469307.1	MFS transporter	-
LCH18_RS08225 (LCH18_08225)	pilU	1725247..1726440 (-)	1194	WP_184118533.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
LCH18_RS08230 (LCH18_08230)	-	1726679..1727740 (-)	1062	WP_224469308.1	3-deoxy-7-phosphoheptulonate synthase	-
LCH18_RS08235 (LCH18_08235)	-	1728230..1730329 (-)	2100	WP_224469310.1	EAL domain-containing protein	-

Sequence

Protein

• Length: 397 a.a.
• Molecular weight: 44675.05 Da
• Isoelectric Point: 6.5063

>NTDB_id=608760 LCH18_RS08225 WP_184118533.1 1725247..1726440(-) (pilU) [Acinetobacter johnsonii strain CSUSB1]
MYSAELLEEARRMMFHMLSKVVEYGGSDLFISADFPPSIKHQGLMKPLGQQNLPSDQTKLFAYSLMNEKQRLEFETELEC
NFAISVPNVSRFRVNVFQQQLHVGMVIRTITAEIPNFTKLQLPTSLKDVIMEKRGLVLVVGGTGSGKSTSLAAMIDHRNE
NSAGHIITVEDPVEYVHKHKKSMITHREVGVDCHSWHNALKNTLRQAPDVILIGEIRDTETMEHAIAFAETGHLCLGTLH
ANNANQALDRIINFFPDERRNQLLMDLSSNMKAIISQRLVRTEDGRGRRAAVEIMLNTPLMSDLILKGNFHELKEVMSKS
RELGMQTFDQALFDLYNQGAIAYEEALRNADSVNELRLQIKLKSSRANPQLNSNSALSFDQAVAEKAKDAEEEKADA

Nucleotide

• Length: 1194 bp

>NTDB_id=608760 LCH18_RS08225 WP_184118533.1 1725247..1726440(-) (pilU) [Acinetobacter johnsonii strain CSUSB1]
ATGTATTCTGCAGAACTTTTAGAAGAAGCCCGTCGAATGATGTTTCACATGCTCAGCAAAGTGGTTGAGTATGGTGGTTC
AGACTTATTTATATCTGCAGACTTTCCGCCAAGTATTAAGCATCAGGGCCTCATGAAGCCACTGGGTCAACAAAACTTAC
CATCTGATCAGACCAAACTCTTTGCTTATAGTTTAATGAACGAAAAGCAACGATTGGAGTTCGAAACTGAGCTGGAGTGT
AATTTTGCAATTAGCGTTCCCAATGTGTCGCGTTTTCGTGTCAATGTTTTTCAGCAGCAACTGCATGTGGGGATGGTGAT
TCGTACGATTACCGCGGAAATTCCTAACTTCACTAAGTTACAACTTCCAACGTCTTTAAAAGACGTGATTATGGAAAAAC
GTGGTTTGGTCCTCGTTGTCGGTGGTACAGGGTCGGGTAAATCGACGTCTTTAGCAGCCATGATTGATCATCGAAATGAA
AACTCAGCAGGGCACATTATTACGGTTGAAGATCCTGTGGAGTATGTACATAAACATAAGAAATCGATGATTACTCATCG
AGAAGTGGGTGTGGACTGTCATTCTTGGCACAATGCTTTGAAAAATACTCTGCGCCAAGCACCCGATGTCATTTTAATTG
GTGAGATTCGTGACACGGAGACTATGGAGCATGCCATAGCTTTTGCGGAAACAGGTCATTTATGCCTTGGAACATTGCAT
GCCAATAATGCAAATCAGGCTTTAGATCGAATTATTAACTTTTTCCCAGACGAACGTCGCAATCAACTTTTGATGGACTT
ATCTTCTAATATGAAGGCGATTATTTCACAGCGTCTGGTGCGAACTGAAGATGGGCGTGGTCGCCGAGCAGCAGTGGAAA
TCATGCTCAATACGCCGTTGATGTCAGACTTGATACTTAAAGGGAATTTCCATGAACTCAAAGAAGTGATGTCGAAGTCA
CGAGAGCTAGGTATGCAGACCTTTGATCAGGCTTTGTTTGATTTATACAATCAAGGTGCAATTGCTTACGAAGAAGCGCT
ACGAAATGCAGACTCGGTCAATGAATTGCGTCTACAGATTAAATTAAAGAGTAGTCGTGCCAACCCGCAGTTAAACTCAA
ATAGTGCTTTGTCTTTTGATCAAGCGGTTGCTGAAAAAGCCAAAGACGCTGAAGAAGAGAAGGCCGACGCCTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (122-282)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	59.331	90.428	0.537
pilU	Acinetobacter baylyi ADP1	54.821	91.436	0.501
pilU	Vibrio cholerae strain A1552	50.578	87.154	0.441
pilT	Legionella pneumophila strain Lp02	42.478	85.39	0.363
pilT	Legionella pneumophila strain ERS1305867	42.478	85.39	0.363
pilT	Acinetobacter baylyi ADP1	43.598	82.62	0.36