Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   LA358_RS05940 Genome accession   NZ_CP083612
Coordinates   1229305..1229625 (-) Length   106 a.a.
NCBI ID   WP_026455883.1    Uniprot ID   A0AAU6TAA5
Organism   Aeromonas enteropelogenes strain FDAARGOS_1536     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1224305..1234625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA358_RS05920 (LA358_05920) - 1224636..1225322 (-) 687 WP_224211059.1 DnaT-like ssDNA-binding domain-containing protein -
  LA358_RS05925 (LA358_05925) - 1225642..1226613 (+) 972 WP_224211060.1 response regulator -
  LA358_RS05930 (LA358_05930) - 1226687..1228084 (-) 1398 WP_224211061.1 peptide MFS transporter -
  LA358_RS05935 (LA358_05935) galU 1228298..1229209 (-) 912 WP_223379943.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  LA358_RS05940 (LA358_05940) comE1/comEA 1229305..1229625 (-) 321 WP_026455883.1 ComEA family DNA-binding protein Machinery gene
  LA358_RS05945 (LA358_05945) pta 1230000..1232171 (-) 2172 WP_224211062.1 phosphate acetyltransferase -
  LA358_RS05950 (LA358_05950) - 1232224..1233426 (-) 1203 WP_026455881.1 acetate kinase -
  LA358_RS05955 (LA358_05955) yfbV 1233732..1234172 (+) 441 WP_268856044.1 terminus macrodomain insulation protein YfbV -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11456.27 Da        Isoelectric Point: 9.6917

>NTDB_id=606630 LA358_RS05940 WP_026455883.1 1229305..1229625(-) (comE1/comEA) [Aeromonas enteropelogenes strain FDAARGOS_1536]
MQIHKFAAVMLLSTLPLFSQPSLAAEQTQTKQTTTTTAAKESGKLNLNTATLAELTTLKGIGEKKAQAILEYREKQGKFT
SVDQLADVTGIGPATLEANRDMMMVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=606630 LA358_RS05940 WP_026455883.1 1229305..1229625(-) (comE1/comEA) [Aeromonas enteropelogenes strain FDAARGOS_1536]
ATGCAGATACACAAGTTCGCCGCCGTGATGTTGCTCTCAACCCTGCCCCTGTTCAGCCAGCCCTCGCTGGCAGCCGAACA
GACGCAGACCAAGCAAACCACTACCACAACCGCCGCCAAGGAGAGTGGCAAACTCAACCTCAATACGGCCACCCTGGCCG
AGCTCACTACCCTCAAGGGTATTGGCGAGAAGAAGGCTCAGGCCATCCTCGAATATCGTGAGAAACAGGGGAAATTTACC
TCTGTAGATCAATTGGCAGATGTCACGGGGATCGGCCCGGCCACGCTGGAAGCCAACAGGGATATGATGATGGTCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

46.789

100

0.481
  comEA/comE1 Glaesserella parasuis strain SC1401

46.465

93.396

0.434
  comEA Vibrio cholerae C6706

45.055

85.849

0.387
  comEA Vibrio cholerae strain A1552

45.055

85.849

0.387
  comEA Vibrio parahaemolyticus RIMD 2210633

41

94.34

0.387
  comEA/celA/cilE Streptococcus mitis NCTC 12261

47.561

77.358

0.368