Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   K9N68_RS02870 Genome accession   NZ_CP083582
Coordinates   612561..612926 (+) Length   121 a.a.
NCBI ID   WP_224343023.1    Uniprot ID   -
Organism   Kovacikia minuta CCNUW1 strain CCNU0001     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 607561..617926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9N68_RS02845 (K9N68_02845) - 607608..607757 (-) 150 WP_224343018.1 hypothetical protein -
  K9N68_RS02850 (K9N68_02850) - 607842..608168 (-) 327 WP_224343019.1 DUF5615 family PIN-like protein -
  K9N68_RS02855 (K9N68_02855) - 608152..608376 (-) 225 WP_224343020.1 DUF433 domain-containing protein -
  K9N68_RS02860 (K9N68_02860) hmpF 608474..610228 (-) 1755 WP_224343021.1 pilus motility taxis protein HmpF -
  K9N68_RS02865 (K9N68_02865) - 611101..612453 (+) 1353 WP_390883229.1 response regulator -
  K9N68_RS02870 (K9N68_02870) pilH 612561..612926 (+) 366 WP_224343023.1 response regulator transcription factor Machinery gene
  K9N68_RS02875 (K9N68_02875) - 612938..613468 (+) 531 WP_224343024.1 chemotaxis protein CheW -
  K9N68_RS43800 (K9N68_02880) - 613622..613870 (+) 249 WP_224343025.1 M48 family metallopeptidase -
  K9N68_RS02885 (K9N68_02885) - 613842..616517 (+) 2676 WP_224343026.1 methyl-accepting chemotaxis protein -
  K9N68_RS02890 (K9N68_02890) - 616641..617438 (+) 798 WP_224343027.1 Hpt domain-containing protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13432.46 Da        Isoelectric Point: 4.7187

>NTDB_id=606337 K9N68_RS02870 WP_224343023.1 612561..612926(+) (pilH) [Kovacikia minuta CCNUW1 strain CCNU0001]
MSTVLVVEDSVTQREMISDLLRGSGLSVTEASDGVEALEQIQGRRPDLVVLDIVMPRMNGYEVCRRLKADPKTQDVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=606337 K9N68_RS02870 WP_224343023.1 612561..612926(+) (pilH) [Kovacikia minuta CCNUW1 strain CCNU0001]
ATGAGTACAGTTTTAGTCGTGGAAGATAGTGTTACCCAACGAGAGATGATTTCAGACCTGTTAAGAGGAAGCGGCTTAAG
CGTGACTGAAGCAAGCGATGGCGTGGAAGCACTGGAGCAGATTCAGGGGCGGCGTCCCGATCTGGTTGTGCTGGATATTG
TGATGCCTCGCATGAATGGATATGAGGTTTGTCGGCGGCTAAAAGCAGATCCAAAGACTCAGGATGTACCCGTGGTGATG
TGTTCATCTAAGGGGGAAGAATTCGATCGGTACTGGGGGATGAAGCAGGGTGCAGATGCCTATATTGCCAAACCTTTTCA
GCCAACTGAGCTGGTGGGAACCGTGAAACAACTGTTGCGAGGTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.033

100

0.76
  micA Streptococcus pneumoniae Cp1015

39.167

99.174

0.388
  pilG Acinetobacter baumannii strain A118

41.228

94.215

0.388
  chpA Acinetobacter baumannii strain A118

40.517

95.868

0.388
  pilL-C Synechocystis sp. PCC 6803

38.333

99.174

0.38
  vicR Streptococcus mutans UA159

37.5

99.174

0.372