Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   LAJ19_RS02965 Genome accession   NZ_CP083455
Coordinates   612514..613119 (-) Length   201 a.a.
NCBI ID   WP_225476831.1    Uniprot ID   -
Organism   Deinococcus taeanensis strain TS293     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 607514..618119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAJ19_RS02945 (LAJ19_02945) - 608647..609828 (+) 1182 WP_225476828.1 glycosyltransferase -
  LAJ19_RS02950 (LAJ19_02950) - 609788..610462 (-) 675 WP_225476829.1 glycosyltransferase -
  LAJ19_RS02955 (LAJ19_02955) - 610513..611724 (+) 1212 WP_225476830.1 MFS transporter -
  LAJ19_RS02960 (LAJ19_02960) - 611811..612431 (+) 621 WP_349774837.1 polysaccharide deacetylase family protein -
  LAJ19_RS02965 (LAJ19_02965) recR 612514..613119 (-) 606 WP_225476831.1 recombination mediator RecR Machinery gene
  LAJ19_RS02970 (LAJ19_02970) - 613217..613507 (-) 291 WP_225476832.1 YbaB/EbfC family nucleoid-associated protein -
  LAJ19_RS02975 (LAJ19_02975) - 613658..614335 (-) 678 WP_225476833.1 NUDIX domain-containing protein -
  LAJ19_RS02980 (LAJ19_02980) - 614433..616421 (-) 1989 WP_225476834.1 amylo-alpha-1,6-glucosidase -
  LAJ19_RS02985 (LAJ19_02985) infC 616545..617147 (+) 603 WP_225477935.1 translation initiation factor IF-3 -
  LAJ19_RS02990 (LAJ19_02990) - 617277..617522 (+) 246 WP_225476835.1 glutaredoxin domain-containing protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21980.35 Da        Isoelectric Point: 6.3346

>NTDB_id=605987 LAJ19_RS02965 WP_225476831.1 612514..613119(-) (recR) [Deinococcus taeanensis strain TS293]
MKYPPSLVALIRELSRLPGIGPKSAQRLAFHLFEQPREDIERLSRALLDAKRDLHTCPICFNITDAERCDVCSDPARDQT
IICVVEEPGDVIAIERSGEYRGLYHVLHGVLSPMNGVGPDKLHIRPLLPRVQEGQEVILATGTTVEGDATALYLQRLLEP
LGAVVSRIAYGLPVGGALEYADEVTLGRALAGRQRVSKPPS

Nucleotide


Download         Length: 606 bp        

>NTDB_id=605987 LAJ19_RS02965 WP_225476831.1 612514..613119(-) (recR) [Deinococcus taeanensis strain TS293]
TTGAAGTACCCGCCTTCCCTGGTGGCCCTGATCCGCGAACTGTCCCGCCTGCCGGGCATCGGCCCGAAAAGCGCGCAGCG
GCTTGCCTTCCACCTGTTCGAGCAGCCGCGTGAGGATATCGAGCGGCTCTCCCGGGCGCTGCTGGACGCCAAACGCGACC
TGCACACCTGCCCCATCTGTTTCAACATCACCGACGCCGAGCGCTGCGACGTGTGCAGCGACCCCGCCCGGGACCAGACC
ATCATCTGCGTGGTCGAGGAACCCGGAGACGTGATCGCCATTGAGCGCAGCGGCGAGTACCGCGGGCTGTATCACGTGCT
GCACGGCGTCCTGAGTCCCATGAACGGCGTCGGGCCGGACAAGCTGCATATTCGTCCGCTGCTGCCGCGCGTGCAGGAGG
GCCAGGAGGTGATCCTGGCGACCGGCACGACCGTGGAAGGTGACGCCACGGCGCTGTACCTGCAGCGGCTGCTGGAGCCG
CTGGGCGCGGTCGTGAGCCGCATCGCGTACGGCCTGCCGGTGGGCGGCGCGCTGGAATACGCCGACGAGGTGACGCTGGG
CCGGGCCCTGGCTGGCCGTCAGCGCGTCAGCAAACCGCCCAGCTGA

Domains

Predicted by InterproScan.

Toprim domain (Toprim_4)

(81-169)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

88.945

99.005

0.881