Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LAJ19_RS01650 Genome accession   NZ_CP083455
Coordinates   344227..344856 (+) Length   209 a.a.
NCBI ID   WP_349774819.1    Uniprot ID   -
Organism   Deinococcus taeanensis strain TS293     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 339227..349856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAJ19_RS01610 (LAJ19_01610) - 339418..340065 (+) 648 WP_225476591.1 SRPBCC family protein -
  LAJ19_RS01615 (LAJ19_01615) - 340169..340633 (-) 465 WP_225476592.1 hypothetical protein -
  LAJ19_RS01620 (LAJ19_01620) - 340690..341013 (-) 324 WP_225476593.1 hypothetical protein -
  LAJ19_RS01625 (LAJ19_01625) - 341010..341600 (-) 591 WP_225476594.1 TetR/AcrR family transcriptional regulator -
  LAJ19_RS01630 (LAJ19_01630) - 341750..342841 (+) 1092 WP_225476595.1 histidinol-phosphate transaminase -
  LAJ19_RS01635 (LAJ19_01635) - 342931..343182 (+) 252 WP_225477909.1 YkgJ family cysteine cluster protein -
  LAJ19_RS01640 (LAJ19_01640) - 343248..343526 (-) 279 WP_225476596.1 hypothetical protein -
  LAJ19_RS01645 (LAJ19_01645) - 343721..344230 (+) 510 WP_349774818.1 hypothetical protein -
  LAJ19_RS01650 (LAJ19_01650) comF 344227..344856 (+) 630 WP_349774819.1 ComF family protein Machinery gene
  LAJ19_RS01655 (LAJ19_01655) - 344899..345435 (-) 537 WP_225476597.1 DUF1684 domain-containing protein -
  LAJ19_RS01660 (LAJ19_01660) - 345437..345640 (-) 204 WP_225476598.1 RNA-binding S4 domain-containing protein -
  LAJ19_RS01665 (LAJ19_01665) - 345706..346221 (-) 516 WP_225476599.1 hypothetical protein -
  LAJ19_RS01670 (LAJ19_01670) - 346218..346682 (-) 465 WP_225476600.1 hypothetical protein -
  LAJ19_RS21850 - 346679..347617 (-) 939 WP_285892301.1 Ig domain-containing protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 21674.18 Da        Isoelectric Point: 11.6824

>NTDB_id=605986 LAJ19_RS01650 WP_349774819.1 344227..344856(+) (comF) [Deinococcus taeanensis strain TS293]
MSALLGALRALLPRPCPGCGAQLGTQPGLCGPCRGGLRAEVQRHSPLRAHPEPHLLTLGTYSGVRRRAVRALKFGQARDL
AGVLGAALAGGVPGGWSVQVVVPVPLHPTRLRERGFNQAELLGQALADTLGVPCVDALRRTRATAQQARRHAADRDVLSG
AFQAAPGRVPRGAVLLVDDVLTTGLTARACQDALLSAGASAVYMAVVAR

Nucleotide


Download         Length: 630 bp        

>NTDB_id=605986 LAJ19_RS01650 WP_349774819.1 344227..344856(+) (comF) [Deinococcus taeanensis strain TS293]
GTGAGTGCCCTGCTTGGCGCGCTGCGCGCCCTGCTGCCCCGCCCCTGCCCTGGCTGCGGCGCACAACTGGGCACGCAGCC
GGGCCTGTGCGGCCCCTGCCGCGGCGGACTGCGGGCCGAGGTGCAGCGCCACAGTCCCCTGCGCGCCCACCCGGAGCCGC
ACCTGCTGACCCTGGGCACGTACAGCGGCGTGCGCCGCCGCGCGGTCCGCGCCCTGAAGTTCGGCCAGGCCCGCGACCTC
GCGGGCGTGCTGGGGGCCGCGCTGGCCGGCGGGGTGCCCGGCGGGTGGTCCGTGCAGGTCGTGGTGCCGGTGCCACTGCA
CCCCACGCGCCTGCGGGAACGGGGGTTCAATCAGGCTGAACTGCTGGGGCAGGCCCTGGCGGATACCCTGGGCGTGCCCT
GCGTGGACGCGCTGCGCCGCACGCGCGCCACCGCCCAGCAGGCCCGGCGGCACGCCGCGGACCGCGACGTCCTGAGCGGC
GCGTTCCAGGCGGCGCCCGGCCGGGTCCCACGCGGCGCTGTGCTGCTCGTCGACGACGTGCTGACCACGGGCCTCACCGC
CCGCGCCTGCCAGGACGCGCTGCTCTCGGCCGGAGCGAGCGCCGTGTACATGGCTGTCGTCGCCCGCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.802

99.043

0.622