Detailed information    

insolico Bioinformatically predicted

Overview

Name   ddrB   Type   Machinery gene
Locus tag   LAJ19_RS01255 Genome accession   NZ_CP083455
Coordinates   268809..269351 (-) Length   180 a.a.
NCBI ID   WP_225476530.1    Uniprot ID   -
Organism   Deinococcus taeanensis strain TS293     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 263809..274351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAJ19_RS01230 (LAJ19_01230) - 264667..265542 (-) 876 WP_225476525.1 stage 0 sporulation family protein -
  LAJ19_RS01235 (LAJ19_01235) rocF 265643..266542 (-) 900 WP_225476526.1 arginase -
  LAJ19_RS01240 (LAJ19_01240) - 266644..267177 (-) 534 WP_225476527.1 GNAT family N-acetyltransferase -
  LAJ19_RS01245 (LAJ19_01245) - 267300..267950 (+) 651 WP_225476528.1 metallophosphoesterase -
  LAJ19_RS01250 (LAJ19_01250) - 268314..268751 (+) 438 WP_225476529.1 hypothetical protein -
  LAJ19_RS01255 (LAJ19_01255) ddrB 268809..269351 (-) 543 WP_225476530.1 single-stranded DNA-binding protein Machinery gene
  LAJ19_RS01260 (LAJ19_01260) - 269417..270160 (-) 744 WP_225476531.1 GNAT family N-acetyltransferase -
  LAJ19_RS01265 (LAJ19_01265) menC 270196..271305 (-) 1110 WP_225476532.1 o-succinylbenzoate synthase -
  LAJ19_RS01275 (LAJ19_01275) - 273355..273606 (+) 252 WP_225476533.1 acyl-CoA-binding protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 20048.45 Da        Isoelectric Point: 7.3986

>NTDB_id=605985 LAJ19_RS01255 WP_225476530.1 268809..269351(-) (ddrB) [Deinococcus taeanensis strain TS293]
MLHIEFTTDLGARVTVDVDSADKLLDIQRQYGRLGWTSGEIPTGGYQFPLDNELDFDWHLIGARKWTSPDGEELVIHKGY
AYRRRELEAVDSRKMKLPAAVKYSRGAKSTDPDHIREKSDGEFEYVTLAIFRGGKRQERYATPGGRTQPSAPAAARPAAP
RPAPAARPAPARPAEDETPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=605985 LAJ19_RS01255 WP_225476530.1 268809..269351(-) (ddrB) [Deinococcus taeanensis strain TS293]
ATGCTGCACATTGAATTCACCACCGACCTAGGCGCCAGAGTCACCGTGGACGTCGACAGCGCCGACAAACTTCTCGACAT
TCAACGCCAGTACGGCCGACTCGGCTGGACCAGCGGCGAAATCCCCACCGGCGGCTACCAATTCCCGCTCGACAACGAAC
TGGACTTCGACTGGCACCTCATCGGCGCCCGCAAATGGACCAGTCCCGACGGCGAGGAACTCGTGATCCACAAAGGCTAC
GCGTACCGCCGCCGCGAACTGGAAGCCGTGGACAGCCGCAAAATGAAACTCCCCGCCGCCGTCAAGTACTCGCGCGGGGC
AAAAAGCACCGACCCCGACCACATCCGCGAGAAATCAGACGGGGAATTCGAGTACGTGACCCTCGCCATCTTCCGGGGCG
GCAAACGTCAGGAACGCTACGCCACCCCGGGCGGCCGCACCCAGCCCAGCGCCCCAGCCGCTGCCCGGCCCGCCGCACCC
CGGCCCGCCCCGGCCGCCCGGCCCGCTCCGGCCCGCCCTGCTGAAGACGAAACGCCCTTCTGA

Domains

Predicted by InterproScan.

DdrB-like protein (DdrB)

(3-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ddrB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

66.837

100

0.728