Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   LAJ19_RS03540 Genome accession   NZ_CP083455
Coordinates   736767..738893 (-) Length   708 a.a.
NCBI ID   WP_225476932.1    Uniprot ID   -
Organism   Deinococcus taeanensis strain TS293     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 731767..743893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAJ19_RS03520 (LAJ19_03520) - 732805..733833 (-) 1029 WP_225476928.1 thiamine ABC transporter substrate-binding protein -
  LAJ19_RS03525 (LAJ19_03525) - 734098..734553 (+) 456 WP_225476929.1 NUDIX domain-containing protein -
  LAJ19_RS03530 (LAJ19_03530) - 734645..735115 (+) 471 WP_225476930.1 MarR family winged helix-turn-helix transcriptional regulator -
  LAJ19_RS03535 (LAJ19_03535) - 735112..736707 (+) 1596 WP_225476931.1 MDR family MFS transporter -
  LAJ19_RS03540 (LAJ19_03540) comEC 736767..738893 (-) 2127 WP_225476932.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LAJ19_RS03545 (LAJ19_03545) comEA 738986..739372 (-) 387 WP_225476933.1 ComEA family DNA-binding protein Machinery gene
  LAJ19_RS03550 (LAJ19_03550) rpmH 739552..739695 (+) 144 WP_012692334.1 50S ribosomal protein L34 -
  LAJ19_RS03555 (LAJ19_03555) rnpA 739773..740240 (+) 468 WP_225476934.1 ribonuclease P protein component -
  LAJ19_RS03560 (LAJ19_03560) yidD 740237..740491 (+) 255 WP_225476935.1 membrane protein insertion efficiency factor YidD -
  LAJ19_RS03565 (LAJ19_03565) - 740488..742080 (+) 1593 WP_225476936.1 YidC/Oxa1 family membrane protein insertase -
  LAJ19_RS03570 (LAJ19_03570) - 742179..742508 (-) 330 WP_225476937.1 hypothetical protein -

Sequence

Protein


Download         Length: 708 a.a.        Molecular weight: 73250.63 Da        Isoelectric Point: 10.3169

>NTDB_id=605988 LAJ19_RS03540 WP_225476932.1 736767..738893(-) (comEC) [Deinococcus taeanensis strain TS293]
MGGVLLATGSPWGLAPLALGAALPLWHASPALLLLTLLGAGAGWTSAHSLQTRPDPLAPWVGAQVTLSGEWDGQFLTLSE
PRARVAVSPKPTQGPGALVVAGRLVAPEGRRLPGGFDQAAWLRAQGGLLLPTPGAVLVGARVKRHAPEGGLRGWFRRGLT
AGLGPTQAALMQAVELGDRGDISREAFGDGVAVQDAFTRAGLAHLMALSGQNVALITAVLVGLLVRLGAAPVWRFGLPGA
LLAPYLLLVQPSPSITRAVIMGGVVLLALAVGRGRPDPLGVIALAALACLLLFPLWLTDVGFQLSFLAVLALTQAQRLAS
RLPERWPRALRLALSATLLAELGTLPVVAGTFGQVPLVGLPANLLAEGLMAALVPLGFLAGLLGPAGGLVNVLTGPLASL
LLLVAQTFGHAPVLTWGAVGMGGLLGAATVLAAGWLWLLGRIPARVLVGCALACMLLTALPGWLRPAREVVFLDVGQGDS
TLVRLPDLTVLIDAGGSVGSGFDVGERTVVPALRALGVRKIDVLVATHADTDHIEGAAGVLRALPVGEVWIGHRKADDPV
LDAVLLAARERRVPVREVRRGDQVQASGAALTVLWPAGPKWSAEDNENSVALLLESRGWRAAFLGDLPDPVEGQLGLGHV
DVLKAAHHGSRHSSGAAFLAQVTPADTVISVGRNTYGHPHADVLERLGAAHSRVWRTDQAGTVRWPIP

Nucleotide


Download         Length: 2127 bp        

>NTDB_id=605988 LAJ19_RS03540 WP_225476932.1 736767..738893(-) (comEC) [Deinococcus taeanensis strain TS293]
ATGGGCGGCGTTCTGCTGGCGACGGGAAGCCCCTGGGGTCTGGCGCCGCTTGCGCTGGGCGCAGCCCTGCCCCTGTGGCA
CGCAAGTCCGGCCCTGCTGCTGCTGACCCTGCTGGGTGCGGGGGCCGGCTGGACTTCGGCGCACAGCCTCCAGACGCGGC
CCGACCCGCTGGCCCCCTGGGTGGGCGCTCAGGTGACCCTGTCGGGCGAGTGGGACGGGCAGTTCCTGACGCTGAGTGAG
CCGCGGGCGCGCGTGGCCGTGTCCCCCAAGCCCACGCAGGGCCCGGGCGCCCTGGTGGTGGCGGGGCGCCTCGTGGCGCC
GGAAGGGCGACGCCTTCCGGGTGGTTTCGATCAGGCGGCGTGGCTGCGCGCGCAGGGCGGCCTGCTGCTGCCCACGCCGG
GCGCGGTGCTCGTGGGCGCCCGGGTCAAGCGGCACGCGCCGGAAGGGGGGCTGCGTGGCTGGTTCCGCCGCGGGCTCACG
GCGGGGCTGGGCCCCACCCAGGCCGCGCTGATGCAGGCCGTGGAGCTCGGTGACCGCGGCGACATCAGCCGCGAGGCATT
CGGGGACGGTGTGGCAGTGCAGGACGCGTTCACGCGCGCCGGCCTGGCCCACCTGATGGCGCTGTCCGGGCAGAACGTCG
CGCTGATCACGGCAGTCCTGGTGGGGCTGCTGGTGCGTCTGGGGGCCGCGCCCGTGTGGCGGTTCGGGCTGCCGGGCGCG
CTGCTCGCGCCGTACCTGCTGCTGGTGCAGCCGTCGCCAAGCATCACGCGGGCCGTGATCATGGGGGGCGTGGTGCTGCT
GGCCTTGGCAGTGGGGCGTGGCCGGCCGGACCCGCTGGGCGTGATCGCGCTGGCGGCCCTGGCGTGCCTGCTGCTGTTCC
CGCTGTGGCTGACGGACGTGGGCTTCCAGCTGTCCTTCCTGGCTGTCCTGGCGCTCACACAGGCCCAGCGGCTCGCCTCC
CGCCTTCCGGAACGCTGGCCGCGTGCCCTGCGCCTGGCGCTGTCCGCCACGCTCCTGGCGGAACTGGGCACCCTGCCGGT
CGTGGCCGGGACCTTCGGACAGGTGCCGCTTGTGGGCCTGCCCGCCAACCTTCTCGCGGAGGGCCTCATGGCGGCGCTCG
TGCCACTGGGCTTCCTGGCGGGCCTGCTGGGGCCGGCCGGTGGGCTGGTGAATGTGCTGACCGGTCCGTTGGCGTCGCTG
CTGCTGCTTGTCGCGCAGACCTTCGGGCACGCGCCGGTGCTGACGTGGGGCGCCGTCGGGATGGGCGGCCTGCTGGGGGC
CGCGACGGTGCTGGCCGCCGGGTGGCTGTGGCTGCTGGGGCGCATTCCGGCGCGCGTGCTCGTCGGGTGTGCGCTGGCCT
GCATGCTGCTCACGGCGCTGCCCGGCTGGCTGCGCCCCGCGCGGGAGGTGGTGTTCCTGGATGTGGGGCAGGGGGACAGC
ACGCTGGTCCGCCTGCCGGACCTCACGGTGCTCATCGATGCGGGCGGGTCCGTGGGCAGCGGGTTCGACGTGGGGGAACG
CACGGTGGTGCCGGCGCTGCGGGCGCTGGGGGTGCGGAAGATTGACGTGCTGGTCGCCACGCACGCGGACACCGATCACA
TCGAGGGGGCTGCGGGCGTGCTGCGGGCCCTGCCGGTCGGGGAGGTGTGGATCGGGCACCGCAAGGCGGACGACCCGGTG
CTGGACGCGGTGCTGCTGGCCGCCCGGGAGCGGCGCGTGCCGGTGCGGGAGGTGCGGCGTGGGGATCAGGTTCAGGCGTC
CGGCGCGGCCCTGACGGTCCTGTGGCCGGCCGGGCCGAAGTGGAGCGCGGAGGACAACGAGAACAGCGTCGCGCTGCTGC
TCGAATCGCGCGGGTGGCGCGCCGCGTTCCTCGGTGACCTGCCGGACCCGGTTGAGGGTCAGCTGGGCCTGGGCCACGTG
GACGTGCTGAAGGCCGCGCATCACGGCAGCCGCCACAGCAGCGGCGCGGCTTTCCTGGCGCAGGTGACGCCGGCAGACAC
GGTGATCAGTGTGGGGCGCAACACGTACGGTCACCCGCATGCCGACGTGCTGGAACGTCTGGGGGCGGCGCACTCGCGGG
TGTGGCGCACCGACCAGGCGGGCACGGTTCGCTGGCCCATTCCTTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(474-628)

Competence protein (Competence)

(193-439)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

68.919

94.068

0.648