Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   NI388_RS10890 Genome accession   NZ_CP099919
Coordinates   2318920..2319546 (-) Length   208 a.a.
NCBI ID   WP_005460620.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain Isc14B     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2313920..2324546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI388_RS10875 (NI388_11525) - 2314620..2314892 (-) 273 WP_005382341.1 HU family DNA-binding protein -
  NI388_RS10880 (NI388_11530) lon 2315085..2317436 (-) 2352 WP_015296438.1 endopeptidase La -
  NI388_RS10885 (NI388_11535) clpX 2317568..2318848 (-) 1281 WP_005460618.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  NI388_RS10890 (NI388_11540) clpP 2318920..2319546 (-) 627 WP_005460620.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  NI388_RS10895 (NI388_11545) tig 2319652..2320956 (-) 1305 WP_005460612.1 trigger factor -
  NI388_RS10900 (NI388_11550) - 2321250..2321435 (-) 186 WP_005482581.1 hypothetical protein -
  NI388_RS10905 (NI388_11555) - 2321482..2323284 (+) 1803 WP_005495987.1 ATP-binding protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 22927.23 Da        Isoelectric Point: 4.8520

>NTDB_id=603365 NI388_RS10890 WP_005460620.1 2318920..2319546(-) (clpP) [Vibrio parahaemolyticus strain Isc14B]
MSYQEKNAMSPIMDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSP
GGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAAGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIK
QKLNNLLAEHTGQPLEVIERDTDRDNFMSAEQAVEYGIVDAVLSHRGA

Nucleotide


Download         Length: 627 bp        

>NTDB_id=603365 NI388_RS10890 WP_005460620.1 2318920..2319546(-) (clpP) [Vibrio parahaemolyticus strain Isc14B]
ATGAGCTACCAAGAAAAAAATGCAATGTCGCCAATTATGGACGCACTAGTACCAATGGTGGTTGAGCAAACTTCCCGAGG
CGAGCGTTCTTACGACATCTACTCACGTCTACTTAAAGAGCGCGTGATTTTTTTAACTGGTCAAGTGGAAGACCACATGG
CAAACCTTGTCGTGGCTCAGCTACTTTTCCTAGAATCTGAAAATCCAGATAAAGACATTTTCCTATACATCAATTCTCCA
GGCGGCAGCGTAACTGCAGGTATGTCAATTTACGACACAATGCAGTTTATTAAACCAAATGTAAGCACTGTATGTATGGG
TCAAGCTTGTTCTATGGGCGCATTCCTGCTTGCAGGTGGTGCTGCTGGTAAACGTTATGTTCTTCCTAACTCACGTGTGA
TGATCCACCAACCACTAGGTGGTTTCCAGGGTCAAGCTTCTGATATCCAAATCCATGCTCAGGAAATCCTGACCATTAAA
CAGAAGCTAAACAACCTGTTAGCAGAACATACTGGCCAGCCTCTTGAAGTGATTGAGCGCGATACCGATCGTGACAACTT
CATGTCAGCAGAGCAGGCTGTGGAATACGGTATCGTGGATGCAGTGTTGAGCCATCGCGGCGCGTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(26-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

69.474

91.346

0.635
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.83

90.385

0.577
  clpP Streptococcus pneumoniae R6

53.646

92.308

0.495
  clpP Streptococcus pneumoniae TIGR4

53.646

92.308

0.495
  clpP Streptococcus pneumoniae D39

53.646

92.308

0.495
  clpP Streptococcus pneumoniae Rx1

53.646

92.308

0.495
  clpP Lactococcus lactis subsp. cremoris KW2

51.795

93.75

0.486
  clpP Streptococcus thermophilus LMG 18311

52.083

92.308

0.481
  clpP Streptococcus thermophilus LMD-9

52.083

92.308

0.481
  clpP Streptococcus mutans UA159

51.295

92.788

0.476
  clpP Streptococcus pyogenes JRS4

51.562

92.308

0.476
  clpP Streptococcus pyogenes MGAS315

51.562

92.308

0.476
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.256

93.75

0.471