Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   K8O89_RS14875 Genome accession   NZ_CP082852
Coordinates   3328211..3329275 (+) Length   354 a.a.
NCBI ID   WP_040522622.1    Uniprot ID   A0AAX0WZI8
Organism   Legionella anisa strain FDAARGOS_1480     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3323211..3334275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8O89_RS14865 (K8O89_14835) - 3324331..3326700 (-) 2370 WP_040522626.1 penicillin-binding protein 1A -
  K8O89_RS14870 (K8O89_14840) - 3326848..3327966 (-) 1119 WP_019233705.1 hypothetical protein -
  K8O89_RS14875 (K8O89_14845) pilM 3328211..3329275 (+) 1065 WP_040522622.1 pilus assembly protein PilM Machinery gene
  K8O89_RS14880 (K8O89_14850) pilN 3329282..3329857 (+) 576 WP_019233703.1 PilN domain-containing protein Machinery gene
  K8O89_RS14885 (K8O89_14855) pilO 3329854..3330453 (+) 600 WP_019233702.1 type 4a pilus biogenesis protein PilO Machinery gene
  K8O89_RS14890 (K8O89_14860) pilP 3330450..3330965 (+) 516 WP_019233701.1 pilus assembly protein PilP Machinery gene
  K8O89_RS14895 (K8O89_14865) pilQ 3330974..3333079 (+) 2106 WP_058388524.1 type IV pilus secretin PilQ Machinery gene
  K8O89_RS14900 (K8O89_14870) aroK 3333347..3333874 (+) 528 WP_019233700.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38813.58 Da        Isoelectric Point: 4.4658

>NTDB_id=603056 K8O89_RS14875 WP_040522622.1 3328211..3329275(+) (pilM) [Legionella anisa strain FDAARGOS_1480]
MLKLFQPKHRSILGIDITSTAVKVLEISGQEDAFVVENYGREVLPANAMDGNIIKDADAVSQCIKKVIDRLHTACKQAAL
AVPDSSIISKVIQVNEGLNDEEMEELIVTEADKYIPYPIDEINLDFEILGHSEKNSAMLDVLIVASRAENVNQRVETAVH
AGLDAVVIDVESYAVERAAQQLAKDLPASGQDKTIAIIDIGACYTHLFVLQGMKLVYSREEKFGGKQLIDSIAEHYEMSL
EQAALAKENGELPADYEKEVLEPFKENILLQIKRTLQFFYSTSQDGEVDHILLSGGLAKLPGLLALVQERLGMSTTIVNP
FSYMTPGKMVNLDTINNDAPALMVACGLALRGIK

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=603056 K8O89_RS14875 WP_040522622.1 3328211..3329275(+) (pilM) [Legionella anisa strain FDAARGOS_1480]
ATGCTCAAATTGTTTCAACCTAAGCATCGTTCAATTCTCGGAATAGATATTACATCAACTGCGGTTAAAGTCTTGGAAAT
TTCAGGTCAGGAGGATGCATTTGTTGTTGAAAATTATGGACGTGAAGTACTACCAGCAAATGCAATGGATGGGAACATAA
TTAAGGATGCTGATGCGGTTTCCCAGTGCATTAAGAAAGTAATTGACCGCTTGCATACAGCATGTAAGCAAGCTGCGTTA
GCTGTTCCTGATTCCTCAATAATTAGCAAAGTGATACAAGTCAATGAAGGTTTAAATGATGAGGAGATGGAGGAGCTCAT
TGTTACAGAGGCTGATAAATACATTCCTTATCCAATAGATGAAATTAATCTTGATTTTGAAATTTTGGGGCATTCTGAAA
AAAACTCGGCCATGTTAGATGTACTTATTGTTGCATCACGTGCAGAAAATGTGAATCAACGTGTTGAGACTGCCGTTCAC
GCAGGTTTAGATGCTGTGGTAATCGATGTAGAATCTTATGCTGTGGAGAGAGCAGCACAACAACTTGCTAAAGATTTACC
TGCATCTGGACAAGATAAAACAATTGCTATCATTGATATTGGTGCCTGCTATACACATTTATTTGTATTGCAAGGTATGA
AATTGGTTTATTCGAGAGAAGAAAAATTTGGAGGCAAACAATTAATAGACTCGATTGCTGAACATTATGAAATGTCTTTG
GAGCAAGCGGCACTTGCTAAAGAAAATGGAGAATTACCTGCAGATTATGAAAAGGAAGTTTTGGAGCCTTTTAAAGAAAA
TATTTTGTTGCAAATCAAACGTACCTTGCAGTTTTTTTATTCCACAAGCCAGGACGGAGAGGTAGATCACATTCTGTTGT
CAGGAGGGTTAGCCAAGCTGCCTGGATTGCTAGCTTTGGTTCAGGAGCGATTAGGAATGAGTACCACAATTGTCAATCCC
TTTTCGTATATGACTCCAGGAAAAATGGTGAATTTGGACACTATAAATAATGATGCTCCTGCACTTATGGTTGCTTGTGG
TCTGGCATTAAGGGGTATTAAGTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Legionella pneumophila strain ERS1305867

70.056

100

0.701
  pilM Acinetobacter baumannii D1279779

44.759

99.718

0.446
  comM Acinetobacter nosocomialis M2

44.759

99.718

0.446
  comM Acinetobacter baylyi ADP1

43.343

99.718

0.432