Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   NDQ64_RS05870 Genome accession   NZ_CP098544
Coordinates   1121934..1123913 (+) Length   659 a.a.
NCBI ID   WP_003688227.1    Uniprot ID   Q5F7Y3
Organism   Neisseria gonorrhoeae strain 10296     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1116934..1128913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ64_RS05850 (NDQ64_05785) - 1117562..1117678 (+) 117 Protein_1133 IS5/IS1182 family transposase -
  NDQ64_RS05855 (NDQ64_05790) - 1117836..1119011 (+) 1176 WP_003691002.1 nitronate monooxygenase family protein -
  NDQ64_RS05860 (NDQ64_05795) - 1119353..1119901 (-) 549 WP_003688232.1 FixH family protein -
  NDQ64_RS05865 (NDQ64_05800) ccoG 1119904..1121400 (-) 1497 WP_003688230.1 cytochrome c oxidase accessory protein CcoG -
  NDQ64_RS05870 (NDQ64_05805) recP/tkt 1121934..1123913 (+) 1980 WP_003688227.1 transketolase Machinery gene
  NDQ64_RS05875 (NDQ64_05810) fumC 1124057..1125445 (+) 1389 WP_003695070.1 class II fumarate hydratase -
  NDQ64_RS05880 (NDQ64_05815) - 1125510..1126433 (-) 924 WP_025455877.1 DMT family transporter -
  NDQ64_RS05885 (NDQ64_05820) ssb 1126806..1127330 (-) 525 WP_003688219.1 single-stranded DNA-binding protein Machinery gene
  NDQ64_RS05890 (NDQ64_05825) - 1127334..1128716 (-) 1383 WP_003688217.1 MFS transporter -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 71575.06 Da        Isoelectric Point: 5.8071

>NTDB_id=600766 NDQ64_RS05870 WP_003688227.1 1121934..1123913(+) (recP/tkt) [Neisseria gonorrhoeae strain 10296]
MSQLANVIRFLSADAVQKANSGHPGAPMGMAEMAETLWTKFLNHNPANPKFYNRDRFVLSNGHASMLLYSLLHLTGYNLS
IEDLKNFRQLHSKTPGHPEYGYTDGVETTTGPLGQGIANAVGMALAEKILAAEFNKDGLNIVDHYTYVFMGDGCLMEGVS
HEACSLAGTLGLGKLIVLYDDNNISIDGKVDGWFTENIPQRFESYGWHVVPNVNGHDTAAIQTAIEAARAETGKPSIICC
KTLIGKGSANKEGSHKTHGAPLGADEIEATRKHLGWAYPAFEIPQEIYDAWNAKEKGAKLEAGWNELFAQYQAKYPAEAA
EFVRRMDKKLPENFDEYVQTALKEVCAKAETVATRKASQNSIEILAKELPELVGGSADLTPSNLTDWSNSVSVTRDKGGN
YIHYGVREFGMGAIMNGLVLHGGVKPFGATFLMFSEYERNALRMAALMKINPVFVFTHDSIGLGEDGPTHQPIEQTATLR
LIPNMDVWRPCDTAESLVAWAEAAKAEDHPSCLIFSRQNLKFQARSEQQLNDIKRGAYVISEAQGNAQAVIIATGSEVGL
AVEAQKVLAGQGIAVRVVSMPSTSVFDRQDAAYQAAVLPEGLPRIAVEAGHTNGWYKYVGLNGAVVGINRFGESAPADLL
FKAFGFTVDNVVDTVKSVL

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=600766 NDQ64_RS05870 WP_003688227.1 1121934..1123913(+) (recP/tkt) [Neisseria gonorrhoeae strain 10296]
ATGTCTCAACTGGCAAACGTAATCCGCTTCCTCTCGGCCGATGCCGTTCAAAAAGCCAATTCCGGCCACCCCGGCGCGCC
TATGGGTATGGCGGAAATGGCGGAAACATTGTGGACGAAATTCCTCAATCACAATCCCGCCAATCCCAAATTCTACAACC
GCGACCGCTTCGTCCTCTCCAACGGTCATGCGTCTATGCTGTTGTACAGCCTGCTGCACCTGACCGGCTACAACCTGAGC
ATTGAAGATCTGAAAAACTTCCGCCAGCTGCACAGCAAAACCCCCGGCCATCCCGAATACGGCTACACCGACGGCGTGGA
AACCACGACCGGCCCGTTGGGGCAAGGTATTGCCAACGCAGTGGGCATGGCATTGGCAGAAAAAATCCTTGCCGCCGAAT
TTAATAAAGACGGTTTGAACATCGTCGATCACTACACTTACGTCTTTATGGGCGACGGCTGCCTGATGGAAGGCGTATCG
CACGAAGCCTGCTCACTCGCCGGCACCTTGGGCTTGGGCAAACTGATTGTTTTGTATGACGATAACAATATCTCCATCGA
CGGCAAAGTGGACGGCTGGTTTACCGAAAACATCCCGCAACGCTTTGAAAGCTACGGCTGGCACGTCGTTCCCAACGTAA
ACGGCCACGACACCGCCGCCATTCAGACGGCCATCGAAGCCGCCCGCGCCGAAACCGGCAAGCCGTCCATCATCTGCTGC
AAAACCTTAATCGGCAAAGGCAGCGCCAACAAAGAAGGCAGCCACAAAACCCACGGCGCGCCTTTGGGTGCGGACGAAAT
CGAAGCCACGCGCAAACATTTGGGTTGGGCTTATCCTGCGTTTGAAATCCCGCAAGAAATTTACGATGCGTGGAATGCCA
AAGAAAAAGGCGCGAAACTGGAAGCCGGATGGAACGAACTGTTCGCGCAATATCAAGCCAAATATCCTGCCGAAGCCGCA
GAATTCGTGCGCCGCATGGATAAAAAGCTGCCGGAAAACTTTGACGAGTACGTTCAGACGGCATTGAAAGAAGTGTGCGC
CAAAGCGGAAACCGTCGCCACCCGCAAAGCCAGCCAAAACAGCATCGAAATCTTGGCAAAAGAGCTGCCCGAACTGGTGG
GCGGTTCTGCCGACCTGACCCCGTCCAACCTGACCGACTGGTCAAACAGCGTCTCCGTTACCCGCGACAAAGGCGGCAAC
TACATCCACTACGGCGTGCGCGAGTTCGGTATGGGTGCGATTATGAACGGTTTGGTATTGCACGGCGGTGTAAAACCCTT
CGGCGCGACTTTCCTGATGTTCAGCGAATACGAACGCAACGCCTTACGCATGGCGGCACTGATGAAAATCAACCCCGTCT
TCGTATTCACCCACGATTCCATCGGTTTGGGCGAGGACGGCCCAACCCACCAGCCTATCGAGCAAACCGCCACCCTGCGC
CTGATTCCGAATATGGACGTATGGCGGCCGTGCGACACCGCAGAATCTCTGGTCGCTTGGGCAGAAGCGGCAAAAGCCGA
AGACCACCCGTCCTGCCTGATTTTCAGCCGTCAAAACCTGAAATTCCAAGCACGCAGCGAGCAACAACTGAACGACATCA
AACGCGGTGCTTACGTAATCAGTGAAGCCCAAGGCAACGCCCAAGCCGTCATCATTGCCACCGGTTCCGAGGTAGGATTG
GCTGTAGAAGCGCAAAAAGTATTGGCAGGACAAGGTATTGCCGTGCGCGTCGTTTCCATGCCGTCCACCAGCGTCTTCGA
CCGCCAAGACGCCGCCTATCAAGCCGCCGTCCTACCGGAAGGCCTGCCGCGCATCGCCGTAGAAGCCGGACACACCAACG
GCTGGTACAAATATGTCGGACTGAACGGCGCAGTCGTCGGCATCAACCGCTTCGGCGAATCCGCCCCTGCCGATCTGCTG
TTCAAAGCATTCGGCTTTACCGTGGACAATGTGGTTGATACGGTGAAATCCGTGCTGTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(546-651)

Transketolase, pyrimidine binding domain (Transket_pyr)

(351-521)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(3-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5F7Y3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

49.623

100

0.499