Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   BAJP3042_RS07195 Genome accession   NZ_CP082243
Coordinates   1408274..1408870 (+) Length   198 a.a.
NCBI ID   WP_192452971.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP3042     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1403274..1413870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3042_RS07165 (BAJP3042_07165) - 1403488..1403943 (+) 456 WP_222835927.1 flavodoxin -
  BAJP3042_RS07170 (BAJP3042_07170) dapD 1404025..1404735 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  BAJP3042_RS07175 (BAJP3042_07175) - 1404806..1405930 (+) 1125 WP_012117444.1 N-acetyldiaminopimelate deacetylase -
  BAJP3042_RS07180 (BAJP3042_07180) - 1405991..1406236 (+) 246 WP_003154596.1 YkuS family protein -
  BAJP3042_RS07185 (BAJP3042_07185) - 1406270..1407076 (-) 807 WP_015417373.1 mechanosensitive ion channel family protein -
  BAJP3042_RS07190 (BAJP3042_07190) - 1407365..1407823 (+) 459 Protein_1370 TlpA disulfide reductase family protein -
  BAJP3042_RS07195 (BAJP3042_07195) rok 1408274..1408870 (+) 597 WP_192452971.1 transcriptional regulator Rok Regulator
  BAJP3042_RS07200 (BAJP3042_07200) - 1408891..1409883 (-) 993 WP_012117448.1 hypothetical protein -
  BAJP3042_RS07205 (BAJP3042_07205) - 1410029..1410631 (+) 603 WP_222835928.1 molybdenum cofactor guanylyltransferase -
  BAJP3042_RS07210 (BAJP3042_07210) - 1410683..1411702 (+) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  BAJP3042_RS07215 (BAJP3042_07215) glp 1411720..1413012 (+) 1293 WP_007611114.1 gephyrin-like molybdotransferase Glp -
  BAJP3042_RS07220 (BAJP3042_07220) mobB 1412973..1413494 (+) 522 WP_007409631.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22553.58 Da        Isoelectric Point: 9.4832

>NTDB_id=600441 BAJP3042_RS07195 WP_192452971.1 1408274..1408870(+) (rok) [Bacillus amyloliquefaciens strain JP3042]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYEKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
AQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=600441 BAJP3042_RS07195 WP_192452971.1 1408274..1408870(+) (rok) [Bacillus amyloliquefaciens strain JP3042]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGAAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
GCACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATTAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

85.567

97.98

0.838