Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   NDQ66_RS10600 Genome accession   NZ_CP098532
Coordinates   1999768..2000955 (+) Length   395 a.a.
NCBI ID   WP_020997408.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10537     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1994768..2005955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ66_RS10585 (NDQ66_10505) - 1995688..1996287 (+) 600 WP_003690290.1 DUF4390 domain-containing protein -
  NDQ66_RS10590 (NDQ66_10510) - 1996287..1998407 (+) 2121 WP_003690126.1 HAMP domain-containing histidine kinase -
  NDQ66_RS10595 (NDQ66_10515) - 1998400..1999677 (+) 1278 WP_003690124.1 sigma-54 dependent transcriptional regulator -
  NDQ66_RS10600 (NDQ66_10520) dprA 1999768..2000955 (+) 1188 WP_020997408.1 DNA-processing protein DprA Machinery gene
  NDQ66_RS10605 (NDQ66_10525) - 2000981..2001442 (+) 462 WP_003690120.1 DUF494 domain-containing protein -
  NDQ66_RS10610 (NDQ66_10530) topA 2001520..2003826 (+) 2307 WP_041421399.1 type I DNA topoisomerase -
  NDQ66_RS10615 (NDQ66_10535) - 2003913..2004709 (+) 797 Protein_2045 IS1595 family transposase -
  NDQ66_RS10620 (NDQ66_10540) - 2004827..2005627 (+) 801 Protein_2046 opacity family porin -

Sequence


Protein


Download         Length: 395 a.a.        Molecular weight: 41911.00 Da        Isoelectric Point: 6.3096

>NTDB_id=600441 NDQ66_RS10600 WP_020997408.1 1999768..2000955(+) (dprA) [Neisseria gonorrhoeae strain 10537]
MTEDERFAWLQLAFTPYIGAESFLLLMRSFGSAQNALSAPAEQVAPAVRHKHALEAWRNAEKRALARQAAEAALEWEMRD
GCRLMLLQDEDFPEMLTQGLTAPPVLFLRGNVRLLHKPSAAIVGSRHATPQAMRIAKDFGRALGGKGIPTVSGMASGIDT
AAHQGALEAEGGTIAVWGTGIDRIYPPANKNLAYEIAEKGLIVSEFPIGTRPYAGNFPRRNRLIAALSQVTLVVEAALES
GSLITAGLAAEMGREVMAVPGSIDNPHSKGCHKLIKDGAKLTECLDDILNECPGLLQNTGASSYSINKDTPDTGRRTVQT
AYAPPPAAKMPSEGAAGGTAVGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELELDGSVAAMPGGRYQRIRT

Nucleotide


Download         Length: 1188 bp        

>NTDB_id=600441 NDQ66_RS10600 WP_020997408.1 1999768..2000955(+) (dprA) [Neisseria gonorrhoeae strain 10537]
ATGACAGAGGACGAACGTTTCGCGTGGCTGCAATTGGCGTTTACGCCCTATATCGGCGCGGAAAGTTTCCTGCTGCTGAT
GCGCAGTTTCGGCAGCGCGCAAAATGCCTTGTCCGCACCGGCGGAACAGGTTGCCCCGGCGGTGCGGCATAAGCACGCGC
TTGAGGCTTGGCGCAATGCGGAAAAACGCGCTTTGGCGCGGCAGGCGGCAGAAGCGGCGTTGGAATGGGAAATGCGGGAC
GGATGCCGTCTGATGCTGCTTCAGGATGAAGATTTCCCCGAAATGCTGACGCAGGGGCTGACCGCGCCGCCGGTTTTGTT
TTTGCGCGGCAACGTGCGGCTGCTGCACAAGCCTTCCGCCGCCATCGTCGGCAGCCGCCATGCCACGCCGCAGGCGATGC
GGATTGCCAAAGATTTCGGCAGGGCGTTGGGTGGGAAAGGCATTCCTACCGTGTCGGGTATGGCTTCGGGCATCGACACC
GCCGCCCATCAGGGCGCACTGGAGGCAGAAGGCGGCACCATCGCCGTGTGGGGGACGGGCATAGACCGCATTTATCCGCC
GGCCAACAAAAACCTTGCCTATGAAATCGCCGAAAAAGGGCTGATTGTCAGCGAGTTCCCCATCGGCACGCGGCCGTATG
CCGGCAACTTTCCGCGCCGCAACCGCCTGATTGCCGCGCTGTCGCAGGTTACGCTGGTGGTCGAGGCCGCCTTGGAATCC
GGTTCGCTGATTACCGCCGGCCTGGCGGCAGAAATGGGGCGCGAAGTGATGGCGGTACCCGGTTCGATAGACAACCCCCA
CAGCAAAGGCTGCCACAAACTGATTAAAGACGGAGCGAAACTGACGGAATGTTTGGACGACATCCTGAACGAATGCCCGG
GGCTATTGCAAAATACGGGTGCTTCATCATATTCTATAAATAAGGATACGCCCGACACGGGCCGCCGCACCGTTCAGACG
GCATACGCCCCGCCGCCTGCCGCAAAAATGCCGTCTGAAGGGGCGGCAGGCGGCACAGCCGTCGGCGGCATACTGGATAA
AATGGGTTTCGACCCCATCCATCCCGACGTGCTTGCCGGACAGTTGGCTATGCCTGCCGCAGATTTGTATGCCGCACTGT
TGGAATTGGAATTGGACGGCAGCGTTGCCGCCATGCCCGGCGGCAGATACCAGCGTATCCGAACTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae MS11

100

100

1

  dprA Neisseria gonorrhoeae strain FA1090

99.241

100

0.992

  dprA Neisseria meningitidis strain C311

89.924

100

0.904

  dprA Neisseria meningitidis MC58

89.924

100

0.904

  dprA Vibrio cholerae O1 biovar El Tor strain E7946

36.709

100

0.367

  dprA Vibrio cholerae strain A1552

36.709

100

0.367