Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   BAJP3042_RS04270 Genome accession   NZ_CP082243
Coordinates   873593..874384 (+) Length   263 a.a.
NCBI ID   WP_015239427.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP3042     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 868593..879384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3042_RS04245 (BAJP3042_04245) - 870587..871471 (+) 885 WP_222835773.1 PhzF family phenazine biosynthesis isomerase -
  BAJP3042_RS04250 (BAJP3042_04250) - 871548..872132 (+) 585 WP_007408549.1 nitroreductase -
  BAJP3042_RS04255 (BAJP3042_04255) - 872172..872363 (-) 192 WP_003155508.1 YfhD family protein -
  BAJP3042_RS04260 (BAJP3042_04260) - 872434..872544 (-) 111 WP_003155504.1 YfhE family protein -
  BAJP3042_RS04265 (BAJP3042_04265) - 872602..873501 (-) 900 WP_060562260.1 TIGR01777 family oxidoreductase -
  BAJP3042_RS04270 (BAJP3042_04270) recX 873593..874384 (+) 792 WP_015239427.1 recombination regulator RecX Regulator
  BAJP3042_RS04275 (BAJP3042_04275) - 874391..874705 (+) 315 WP_032867739.1 YfhH family protein -
  BAJP3042_RS04280 (BAJP3042_04280) - 874849..876042 (+) 1194 WP_025284446.1 MFS transporter -
  BAJP3042_RS04285 (BAJP3042_04285) - 876082..876471 (-) 390 WP_039062791.1 DUF2606 family protein -
  BAJP3042_RS04290 (BAJP3042_04290) - 876434..877345 (-) 912 WP_222835774.1 serine protease -
  BAJP3042_RS04295 (BAJP3042_04295) - 877490..877642 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  BAJP3042_RS04300 (BAJP3042_04300) - 877766..878035 (+) 270 WP_003155492.1 YfhJ family protein -
  BAJP3042_RS04305 (BAJP3042_04305) - 878168..878695 (+) 528 WP_015417063.1 SH3 domain-containing protein -
  BAJP3042_RS04310 (BAJP3042_04310) - 878781..879116 (+) 336 WP_127070451.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30935.10 Da        Isoelectric Point: 5.8035

>NTDB_id=600424 BAJP3042_RS04270 WP_015239427.1 873593..874384(+) (recX) [Bacillus amyloliquefaciens strain JP3042]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQYGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYSYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=600424 BAJP3042_RS04270 WP_015239427.1 873593..874384(+) (recX) [Bacillus amyloliquefaciens strain JP3042]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGTACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACGCCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACAGCTACTT
AAATGACAAAGAATTTGCGGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGTGCGTTTACATTTGATGAGCAGATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTGAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGCTATGAAAGCGGAATGAAG
GTTAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.468

100

0.795