Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   K6973_RS11170 Genome accession   NZ_CP082206
Coordinates   2253823..2255043 (+) Length   406 a.a.
NCBI ID   WP_138126917.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain DY107     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2248823..2260043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6973_RS11140 (K6973_11140) - 2250442..2251536 (+) 1095 WP_222819415.1 IS30 family transposase -
  K6973_RS11145 (K6973_11145) - 2251800..2251991 (+) 192 WP_017766886.1 hypothetical protein -
  K6973_RS11150 (K6973_11150) - 2251991..2252359 (+) 369 WP_261987943.1 hypothetical protein -
  K6973_RS11155 (K6973_11155) - 2252432..2252614 (+) 183 Protein_2162 hypothetical protein -
  K6973_RS11165 (K6973_11165) rlmH 2253134..2253613 (-) 480 WP_218654958.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  K6973_RS11170 (K6973_11170) htrA 2253823..2255043 (+) 1221 WP_138126917.1 trypsin-like peptidase domain-containing protein Regulator
  K6973_RS11175 (K6973_11175) spo0J 2255158..2255931 (+) 774 WP_218654960.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 406 a.a.        Molecular weight: 42856.29 Da        Isoelectric Point: 5.2394

>NTDB_id=600131 K6973_RS11170 WP_138126917.1 2253823..2255043(+) (htrA) [Streptococcus dysgalactiae strain DY107]
MPSMKHILKSLGILLIGFLGGLLAIFTFNATQQSSSTSHTGSATTSEMVFNNTTDTTKAVKVVQNAVVSVINYQADPSSS
ISNPYTKLFGEDQTRENKDTELSIFREGSGVIYRKNGDSAYVITNNHVIDGAKRIEILMADGTKVIGELVGADTYSDLAV
VKVASDKIETVAKFADSTKLNVGEVAIAIGSPLGTQYANSVTEGIVSSLSRTVTLKNEDGDTVSTNAIQTDAAINPGNSG
GPLINIEGQVIGINSSKISSTPAGDNGNRGSIEGIGFAIPSSDVVKIIKQLEKYGEVIRPALGIHMVNLNDLSTNALYEI
NIPTGVTGGIVVASVQDGMPASGKLAQYDVITEIDGKAVNSISDLQSNLYGHDINDTIKVTFYRGTTKKKADITLTKTTQ
DLTKKQ

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=600131 K6973_RS11170 WP_138126917.1 2253823..2255043(+) (htrA) [Streptococcus dysgalactiae strain DY107]
ATGCCATCTATGAAACATATCTTAAAATCCTTAGGCATTTTACTCATTGGATTTTTAGGAGGATTGTTAGCAATTTTCAC
CTTTAATGCTACTCAACAGTCTTCCTCTACCTCACATACTGGTAGTGCGACGACGAGTGAGATGGTTTTTAATAATACTA
CTGATACAACGAAAGCGGTTAAAGTCGTTCAAAATGCAGTAGTATCAGTGATTAACTATCAAGCAGATCCTTCTTCATCT
ATTTCAAATCCCTACACAAAACTCTTTGGAGAAGATCAAACAAGAGAAAATAAAGATACCGAGTTATCTATTTTTAGAGA
GGGTTCTGGTGTTATTTATCGAAAAAATGGTGATTCTGCGTACGTTATTACTAATAATCATGTCATTGACGGTGCAAAGC
GAATTGAAATTCTTATGGCAGATGGAACCAAAGTCATAGGAGAGTTAGTTGGAGCTGATACATATTCTGACTTGGCGGTT
GTTAAAGTTGCCTCAGATAAAATTGAGACAGTTGCTAAATTTGCAGATTCTACTAAGCTTAATGTTGGAGAAGTTGCTAT
CGCAATCGGTAGCCCACTAGGAACTCAGTACGCCAATTCCGTTACAGAAGGAATTGTTTCTAGTCTCAGTCGTACCGTTA
CCTTAAAAAATGAAGATGGGGACACTGTTTCAACAAATGCCATTCAAACTGATGCTGCTATTAATCCTGGAAACTCTGGT
GGTCCCCTTATTAATATTGAAGGACAGGTTATTGGTATCAATTCAAGTAAAATTTCTTCTACACCTGCTGGAGATAACGG
TAATAGAGGATCTATTGAAGGTATTGGATTTGCAATCCCATCTAGTGATGTTGTTAAAATAATCAAGCAATTAGAGAAGT
ATGGTGAAGTCATTAGACCAGCCCTTGGAATTCATATGGTCAACTTAAATGACTTATCTACTAATGCTCTCTATGAAATC
AATATCCCTACGGGTGTAACTGGTGGGATTGTGGTCGCTTCTGTTCAAGATGGAATGCCAGCTAGTGGTAAACTTGCCCA
GTACGACGTTATTACTGAAATTGATGGTAAAGCCGTCAACTCAATCAGTGATCTTCAAAGCAACCTATACGGCCATGACA
TTAACGATACCATCAAGGTAACCTTTTATAGAGGGACAACCAAGAAAAAAGCAGATATTACCTTAACTAAAACAACCCAG
GATTTGACCAAAAAGCAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

58.458

99.015

0.579

  htrA Streptococcus mitis NCTC 12261

53.563

100

0.537

  htrA Streptococcus pneumoniae Rx1

53.563

100

0.537

  htrA Streptococcus pneumoniae D39

53.563

100

0.537

  htrA Streptococcus pneumoniae R6

53.563

100

0.537

  htrA Streptococcus pneumoniae TIGR4

53.563

100

0.537

  htrA Streptococcus gordonii str. Challis substr. CH1

53.465

99.507

0.532