Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   K6973_RS02060 Genome accession   NZ_CP082206
Coordinates   379962..381932 (+) Length   656 a.a.
NCBI ID   WP_218655080.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain DY107     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 374962..386932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6973_RS02040 (K6973_02040) sufU 374998..375474 (+) 477 WP_111715171.1 Fe-S cluster assembly sulfur transfer protein SufU -
  K6973_RS02045 (K6973_02045) sufB 375467..376885 (+) 1419 WP_003054855.1 Fe-S cluster assembly protein SufB -
  K6973_RS02050 (K6973_02050) - 377061..378239 (-) 1179 WP_222819499.1 serine hydrolase -
  K6973_RS02055 (K6973_02055) pbp3 378383..379621 (-) 1239 WP_218655079.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  K6973_RS02060 (K6973_02060) amiA 379962..381932 (+) 1971 WP_218655080.1 peptide ABC transporter substrate-binding protein Regulator
  K6973_RS02065 (K6973_02065) amiC 381998..383500 (+) 1503 WP_218655081.1 ABC transporter permease Regulator
  K6973_RS02070 (K6973_02070) amiD 383500..384426 (+) 927 WP_218655082.1 oligopeptide ABC transporter permease OppC Regulator
  K6973_RS02075 (K6973_02075) amiE 384435..385487 (+) 1053 WP_218655083.1 ABC transporter ATP-binding protein Regulator
  K6973_RS02080 (K6973_02080) amiF 385498..386421 (+) 924 WP_218655084.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72026.44 Da        Isoelectric Point: 5.1203

>NTDB_id=600084 K6973_RS02060 WP_218655080.1 379962..381932(+) (amiA) [Streptococcus dysgalactiae strain DY107]
MKKSRWLATLGVAVLSVSVLAACGGKKASGGSDATKAYKYVFVNDPKSLDYILTNGGGTTDVATQMVDGLLENDEYGNLV
PSLAKDWKVSKDGLTYTYTLRDGVSWYTADGEEYAPVTAEDFVTGLKHAIDGKSEALYVVEDSIKNLKAYQNGEVDFKEV
GVKALDDKTVQYTLNKPESYWNSKTTYSVLFPVNAKFLKSQGKEFGTTDPSSILVNGAYFLSAFTSKSSMEFHKNENYWD
AKNVGIESVKLTYSDGSDPGSFYKNFDKGEFSVARLYPNDPTYKSARKNYADNITYGMLTGNIRHLTWNLNRTSFKNTKK
DPAQQDAGKKALNNKDFRQAIQFAFDRASFQAQTAGQDAKTKALRNMLVPPTFVTIGENDFGSEVEKNLATMGDEWKDVN
LKDAQDGFYNPEKAKAEFAKAKEALTAEGVTFPVQLDYPVDQANAATVQEAQSFKQSVEASLGKENVVVNVLETETSTHE
AQGFYAETPEQQDYDIISSWWGPDYQDPRTYLDIMSPVDGGSVIQKLGIKAGESKDVVAAAGLDTYQTLLDEAAAITDDN
DARYKAYAKAQAYLTDSAVDIPVVALGGTPRVSKVIPFSGGFSWAGAKGPLTYKGMKLQDKPVAAKQYEKAKEKWLKAKA
KSNADYAEKLADHVEK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=600084 K6973_RS02060 WP_218655080.1 379962..381932(+) (amiA) [Streptococcus dysgalactiae strain DY107]
ATGAAGAAAAGTAGATGGTTAGCAACTCTAGGTGTTGCGGTATTATCAGTATCCGTTTTAGCAGCTTGTGGTGGCAAAAA
GGCCTCAGGCGGTTCAGATGCAACTAAAGCTTACAAGTATGTGTTTGTTAACGATCCAAAATCGTTGGATTACATTTTAA
CAAATGGTGGCGGAACAACTGATGTGGCAACGCAAATGGTTGATGGTCTTTTGGAAAATGACGAGTATGGTAACTTGGTA
CCATCACTTGCTAAAGATTGGAAAGTTTCAAAAGATGGGCTAACCTATACTTACACGCTTCGTGATGGTGTTTCTTGGTA
CACGGCTGATGGTGAAGAATACGCACCTGTAACAGCAGAAGATTTTGTGACTGGGCTTAAACACGCGATTGATGGCAAGT
CTGAAGCTTTATATGTTGTCGAAGATTCCATTAAAAATTTGAAAGCTTACCAAAATGGTGAGGTCGATTTCAAAGAGGTC
GGTGTTAAAGCCCTTGACGATAAAACCGTTCAATATACTTTGAACAAACCGGAAAGTTACTGGAACTCAAAAACAACTTA
TAGCGTTCTCTTCCCGGTCAATGCAAAATTCTTGAAATCACAAGGTAAAGAGTTTGGGACAACAGATCCATCATCAATCC
TTGTTAATGGTGCTTATTTCTTGAGTGCCTTCACCTCAAAATCATCTATGGAATTCCATAAAAATGAAAACTACTGGGAT
GCTAAGAATGTTGGGATAGAATCTGTTAAATTGACTTACTCAGATGGTTCAGACCCAGGTTCTTTCTACAAGAACTTTGA
CAAGGGTGAGTTCAGCGTTGCACGACTTTACCCAAATGATCCTACTTACAAATCAGCTAGGAAAAACTATGCTGATAACA
TTACTTATGGAATGTTGACTGGTAATATCCGTCATTTAACATGGAACTTGAACCGTACTTCTTTCAAAAACACAAAGAAA
GACCCTGCACAACAAGATGCTGGTAAGAAAGCTCTTAACAACAAGGACTTCCGTCAAGCTATCCAGTTTGCTTTTGACCG
TGCATCATTCCAAGCACAAACTGCAGGTCAGGATGCCAAAACAAAAGCCTTACGTAACATGCTTGTGCCACCAACTTTTG
TGACAATCGGAGAAAATGACTTTGGTTCAGAAGTTGAAAAAAACCTTGCTACCATGGGTGATGAATGGAAAGATGTTAAT
TTAAAAGATGCTCAAGATGGATTTTACAATCCTGAAAAAGCAAAAGCTGAGTTTGCAAAAGCCAAAGAAGCTTTGACAGC
TGAGGGGGTAACCTTCCCAGTTCAATTAGATTATCCTGTTGACCAGGCAAACGCAGCAACTGTTCAAGAGGCACAATCCT
TTAAACAATCTGTTGAAGCATCACTTGGTAAAGAAAATGTTGTTGTCAATGTTCTTGAAACAGAAACCTCAACTCACGAA
GCCCAAGGCTTCTATGCTGAGACACCAGAGCAACAAGACTACGATATCATTTCTTCATGGTGGGGACCAGACTACCAAGA
CCCACGTACCTACCTTGATATTATGAGTCCAGTAGATGGTGGATCGGTTATCCAAAAACTCGGGATTAAAGCAGGTGAAA
GCAAGGATGTGGTAGCAGCTGCAGGTCTTGATACCTACCAAACTCTTCTTGATGAAGCAGCAGCAATTACAGACGATAAC
GATGCGCGCTACAAGGCTTATGCAAAAGCACAAGCTTACCTTACTGATAGTGCCGTAGATATTCCAGTCGTGGCATTGGG
TGGTACTCCTCGTGTTTCTAAAGTTATTCCATTTAGCGGGGGCTTCTCTTGGGCAGGTGCTAAGGGTCCTCTAACATATA
AAGGAATGAAACTTCAAGACAAACCTGTTGCGGCAAAACAATACGAAAAAGCAAAAGAAAAATGGTTGAAAGCAAAGGCT
AAATCAAACGCAGACTATGCTGAGAAATTAGCTGATCACGTTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

50.53

100

0.509
  amiA3 Streptococcus thermophilus LMG 18311

49.396

100

0.498
  amiA3 Streptococcus thermophilus LMD-9

49.094

100

0.495