Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   K6973_RS02070 Genome accession   NZ_CP082206
Coordinates   383500..384426 (+) Length   308 a.a.
NCBI ID   WP_218655082.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain DY107     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 378500..389426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6973_RS02060 (K6973_02060) amiA 379962..381932 (+) 1971 WP_218655080.1 peptide ABC transporter substrate-binding protein Regulator
  K6973_RS02065 (K6973_02065) amiC 381998..383500 (+) 1503 WP_218655081.1 ABC transporter permease Regulator
  K6973_RS02070 (K6973_02070) amiD 383500..384426 (+) 927 WP_218655082.1 oligopeptide ABC transporter permease OppC Regulator
  K6973_RS02075 (K6973_02075) amiE 384435..385487 (+) 1053 WP_218655083.1 ABC transporter ATP-binding protein Regulator
  K6973_RS02080 (K6973_02080) amiF 385498..386421 (+) 924 WP_218655084.1 ABC transporter ATP-binding protein Regulator
  K6973_RS02085 (K6973_02085) - 386538..388034 (+) 1497 WP_222819500.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34871.95 Da        Isoelectric Point: 9.4052

>NTDB_id=600086 K6973_RS02070 WP_218655082.1 383500..384426(+) (amiD) [Streptococcus dysgalactiae strain DY107]
METINKSKFRFVERDSRASEVIDTPAYSYWKSVFRQFFSKKSTIFMLMILVTILLMSFIYPMFANYDFGDVSNINDFSKR
YIWPNAEFWFGTDKNGQSLFDGVWYGARNSILISVIATLINVTIGVILGAIWGVSKAFDKVMIEIYNVISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAIKNLLPQLVSVIMTMLSQMLPVYVS
SEAFLSFFGIGLPTTTPSLGRLIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=600086 K6973_RS02070 WP_218655082.1 383500..384426(+) (amiD) [Streptococcus dysgalactiae strain DY107]
ATGGAAACGATTAATAAATCAAAATTTCGATTTGTTGAGCGCGATAGCAGAGCCTCCGAAGTGATTGATACCCCTGCTTA
TTCTTATTGGAAATCCGTATTCCGTCAATTTTTCTCTAAAAAGTCTACTATCTTCATGCTAATGATTTTAGTGACCATCT
TATTGATGAGTTTTATTTACCCAATGTTTGCAAATTATGACTTTGGTGATGTGAGTAATATCAACGATTTCTCGAAACGT
TATATTTGGCCCAACGCTGAATTCTGGTTTGGAACAGATAAAAACGGACAATCTTTGTTTGATGGTGTCTGGTATGGAGC
GCGTAACTCTATCCTAATTTCTGTTATAGCAACATTGATTAATGTGACTATTGGAGTTATTTTAGGAGCTATTTGGGGAG
TTTCTAAAGCATTTGATAAAGTTATGATTGAGATTTATAATGTCATCTCAAACATTCCTTCAATGTTAATTATCATTGTT
TTGACCTATTCATTAGGTGCTGGTTTTTGGAATTTGATTTTAGCTTTCTGTATCACTGGGTGGATCGGTGTAGCTTACTC
TATCCGTGTGCAAATCTTACGTTACCGTGATTTGGAGTACAACCTTGCTAGTCAAACCCTAGGAACACCAATGTACAAAA
TTGCCATTAAGAACCTCTTGCCTCAATTGGTTTCAGTTATCATGACCATGTTGTCACAAATGTTACCAGTGTACGTGTCT
TCTGAGGCCTTCTTATCCTTCTTTGGGATTGGTTTACCAACCACGACTCCAAGCTTAGGGCGTTTGATTGCTAATTATTC
TAGCAACTTAACAACAAATGCTTACCTTTTCTGGATTCCCTTAGTAACGTTGATTTTAGTATCATTACCATTGTATATTG
TCGGACAAAACCTGGCAGATGCCAGTGACCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

72.403

100

0.724
  amiD Streptococcus thermophilus LMG 18311

72.403

100

0.724
  amiD Streptococcus thermophilus LMD-9

72.403

100

0.724