Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   K6973_RS02065 Genome accession   NZ_CP082206
Coordinates   381998..383500 (+) Length   500 a.a.
NCBI ID   WP_218655081.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain DY107     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 376998..388500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6973_RS02050 (K6973_02050) - 377061..378239 (-) 1179 WP_222819499.1 serine hydrolase -
  K6973_RS02055 (K6973_02055) pbp3 378383..379621 (-) 1239 WP_218655079.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  K6973_RS02060 (K6973_02060) amiA 379962..381932 (+) 1971 WP_218655080.1 peptide ABC transporter substrate-binding protein Regulator
  K6973_RS02065 (K6973_02065) amiC 381998..383500 (+) 1503 WP_218655081.1 ABC transporter permease Regulator
  K6973_RS02070 (K6973_02070) amiD 383500..384426 (+) 927 WP_218655082.1 oligopeptide ABC transporter permease OppC Regulator
  K6973_RS02075 (K6973_02075) amiE 384435..385487 (+) 1053 WP_218655083.1 ABC transporter ATP-binding protein Regulator
  K6973_RS02080 (K6973_02080) amiF 385498..386421 (+) 924 WP_218655084.1 ABC transporter ATP-binding protein Regulator
  K6973_RS02085 (K6973_02085) - 386538..388034 (+) 1497 WP_222819500.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 55906.24 Da        Isoelectric Point: 10.2291

>NTDB_id=600085 K6973_RS02065 WP_218655081.1 381998..383500(+) (amiC) [Streptococcus dysgalactiae strain DY107]
MKKYILNRILRSLVSVVLVTALTYTIVYTLVPVGLIFKQDPNYNKMTTTPDKKAAYESLTFQRMGYINYFSSKELKDNAS
KVDSSVTTEATSANKVIYEKYINSLGNGWQLKRFPVSKKFYATRKIPIYERVWNFFSNLVVIDHPWKIQDKDNPNLARYV
RLENDKSIGWSLVGSGTQHKYLVYANGKFPYLHQNLVTLNLGTSYPTYSNIPVLQVISQGQGRTALQDVTFPSGVTKKSS
VDIYSRTYKNPKSMDDITKANYGKGDSYTKTINNYVDPSMIHNSFVIGFFGVLIAYVIGLPLGLFMARFKNTYFDRFSTA
TMTFMLALPSIAVIYVVRFLGSMVGLPDSFPMLGASSPKSYVLPALILGILSIPSTVIWFRRYLVDLQASDWVRFARSKG
LSESEIYRDHLFKNAMVPIVSGIPASIILAIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVSLLLG
DIAMTIVDPRIKLSTKKGGK

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=600085 K6973_RS02065 WP_218655081.1 381998..383500(+) (amiC) [Streptococcus dysgalactiae strain DY107]
ATGAAAAAATACATTTTAAACCGTATCTTACGATCGTTAGTATCGGTTGTTCTGGTAACGGCTTTAACATACACCATCGT
ATATACCCTCGTCCCTGTCGGTCTGATCTTTAAACAAGACCCTAACTACAATAAGATGACGACGACACCAGATAAAAAGG
CTGCTTACGAAAGCTTAACCTTCCAACGTATGGGGTATATTAATTACTTTTCAAGTAAAGAGTTAAAAGATAATGCTTCT
AAAGTAGATAGTAGTGTAACGACTGAAGCGACTAGTGCTAACAAAGTCATTTATGAGAAATATATTAATTCCCTTGGTAA
TGGCTGGCAGCTAAAACGTTTCCCGGTTAGCAAAAAATTCTATGCTACTCGTAAGATTCCTATTTACGAACGTGTTTGGA
ACTTTTTCTCAAATTTAGTTGTTATCGACCATCCTTGGAAGATTCAAGACAAGGATAACCCTAACCTAGCTAGATATGTT
CGCCTTGAAAACGATAAATCTATTGGCTGGTCACTTGTTGGATCGGGGACACAACACAAATACCTTGTTTATGCCAATGG
CAAGTTCCCTTACCTTCACCAAAACCTTGTTACCCTAAACTTAGGAACATCTTATCCAACATACAGCAATATTCCTGTTC
TTCAGGTTATTTCACAAGGACAAGGACGAACAGCTCTTCAAGATGTCACTTTCCCATCAGGGGTGACTAAAAAATCATCA
GTGGATATTTACAGTCGTACTTATAAAAATCCAAAATCAATGGATGATATTACCAAAGCAAACTATGGTAAGGGCGATTC
ATATACTAAGACCATTAATAACTATGTTGACCCATCAATGATTCACAATTCCTTTGTCATTGGGTTCTTTGGTGTCCTAA
TTGCTTATGTTATTGGACTACCTCTCGGTCTATTTATGGCACGCTTTAAAAATACCTATTTTGATCGTTTTTCAACAGCA
ACCATGACCTTCATGCTTGCCTTACCAAGTATTGCCGTTATCTATGTTGTTCGCTTCCTAGGAAGTATGGTTGGCTTGCC
AGATAGTTTTCCTATGCTAGGAGCGTCTAGCCCTAAATCTTACGTATTACCAGCTCTTATTTTGGGAATTTTAAGTATCC
CAAGTACAGTTATCTGGTTCCGTCGCTATCTTGTTGACCTTCAGGCTAGTGATTGGGTACGGTTTGCTCGCTCAAAAGGG
TTATCAGAATCTGAAATTTATAGAGACCACCTTTTCAAAAATGCTATGGTTCCGATTGTCTCAGGTATTCCGGCAAGTAT
TATTCTTGCGATTGGTGGAGCGACATTAACAGAGACGGTTTTTGCCTTCCCAGGTATGGGGAAAATGTTGATTGATTCTA
TCAAATCAGCTAACAACTCAATGATTGTTGGGTTAACCTTTATTTTCACTGTCTTGTCAATTGTATCTCTACTGTTAGGA
GATATTGCTATGACAATTGTCGATCCACGTATTAAATTGTCAACTAAAAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

60

100

0.6
  amiC Streptococcus thermophilus LMD-9

59.8

100

0.598
  amiC Streptococcus thermophilus LMG 18311

59.8

100

0.598