Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   NDK36_RS11800 Genome accession   NZ_CP098491
Coordinates   2204021..2205511 (-) Length   496 a.a.
NCBI ID   WP_014480148.1    Uniprot ID   -
Organism   Bacillus subtilis strain NB205     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2199021..2210511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDK36_RS11770 (NDK36_11770) gudB 2199175..2200449 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  NDK36_RS11775 (NDK36_11775) mecB 2200605..2201189 (-) 585 WP_003230533.1 genetic competence negative regulator -
  NDK36_RS11780 (NDK36_11780) ypbG 2201348..2202127 (-) 780 WP_014480146.1 metallophosphoesterase -
  NDK36_RS11785 (NDK36_11785) ypbF 2202213..2202656 (-) 444 WP_014480147.1 YpbF family protein -
  NDK36_RS11790 (NDK36_11790) claE 2202719..2203441 (-) 723 WP_004398603.1 LysM peptidoglycan-binding domain-containing protein -
  NDK36_RS11795 (NDK36_11795) ypbD 2203392..2203994 (-) 603 WP_014477208.1 CPBP family intramembrane glutamic endopeptidase -
  NDK36_RS11800 (NDK36_11800) recS 2204021..2205511 (-) 1491 WP_014480148.1 ATP-dependent DNA helicase RecQ Machinery gene
  NDK36_RS11805 (NDK36_11805) gmmB 2205504..2206562 (-) 1059 WP_014480149.1 helix-turn-helix domain-containing protein -
  NDK36_RS11810 (NDK36_11810) fdxA 2206828..2207076 (+) 249 WP_003225461.1 ferredoxin -
  NDK36_RS11815 (NDK36_11815) fmnP 2207116..2207688 (-) 573 WP_014480150.1 riboflavin transporter FmnP -
  NDK36_RS11820 (NDK36_11820) serA 2208185..2209762 (+) 1578 WP_004398713.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56464.09 Da        Isoelectric Point: 6.5562

>NTDB_id=600087 NDK36_RS11800 WP_014480148.1 2204021..2205511(-) (recS) [Bacillus subtilis strain NB205]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAVDTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYELKGARSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=600087 NDK36_RS11800 WP_014480148.1 2204021..2205511(-) (recS) [Bacillus subtilis strain NB205]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTCAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGTCACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGTGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGTCCGGGAATTGTTTATTGTCCGACACGGAAATGG
GCCGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CCGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCCGATATCAGATATGTGATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGCCGTGATGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTAATCCGTGTCCTAGAAAAGACGGAGGAGCGGGATGAGAGAAGGCTGC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGGAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTCGATGAATCATACGAGCCTGATGACGGAAACCTCCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACTAAAAGGGGCACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992