Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   K6973_RS02075 Genome accession   NZ_CP082206
Coordinates   384435..385487 (+) Length   350 a.a.
NCBI ID   WP_218655083.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain DY107     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 379435..390487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6973_RS02060 (K6973_02060) amiA 379962..381932 (+) 1971 WP_218655080.1 peptide ABC transporter substrate-binding protein Regulator
  K6973_RS02065 (K6973_02065) amiC 381998..383500 (+) 1503 WP_218655081.1 ABC transporter permease Regulator
  K6973_RS02070 (K6973_02070) amiD 383500..384426 (+) 927 WP_218655082.1 oligopeptide ABC transporter permease OppC Regulator
  K6973_RS02075 (K6973_02075) amiE 384435..385487 (+) 1053 WP_218655083.1 ABC transporter ATP-binding protein Regulator
  K6973_RS02080 (K6973_02080) amiF 385498..386421 (+) 924 WP_218655084.1 ABC transporter ATP-binding protein Regulator
  K6973_RS02085 (K6973_02085) - 386538..388034 (+) 1497 WP_222819500.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38950.97 Da        Isoelectric Point: 6.1088

>NTDB_id=600087 K6973_RS02075 WP_218655083.1 384435..385487(+) (amiE) [Streptococcus dysgalactiae strain DY107]
MTKENNVILTAKDVVVEFDVRDRVLTAIRNVSLELIEGEVLAFVGESGSGKSVLTKTFTGMLESNGRIANGSIVYRGQEL
TELKTNKEWAKIRGSKIATIFQDPMTSLSPIKTIGSQITEVIIKHQKVSHSKAKELALDYMNKVGIPNATKRFDDYPFEY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIELLKSLQKEYHFTIIFITHDLGVVASIADKVAVMYAGEIVE
FGTVEEIFYDPRHPYTWSLLSSLPQLANESGELYSIPGTPPSLYSPIVGDAFALRSEYAMVLDFEETPPAISVSDTHWAK
TWLLHPEAPKVQKPAVIQDLHQKILKKMSR

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=600087 K6973_RS02075 WP_218655083.1 384435..385487(+) (amiE) [Streptococcus dysgalactiae strain DY107]
ATGACAAAAGAAAATAATGTAATCTTAACTGCCAAAGATGTGGTGGTGGAATTCGACGTGCGCGACCGTGTTTTAACGGC
TATTCGGAACGTTTCTTTAGAGCTTATTGAAGGAGAGGTCCTTGCTTTTGTAGGAGAATCAGGTTCAGGTAAATCTGTTT
TAACCAAGACCTTTACAGGGATGTTGGAGTCTAATGGACGTATTGCCAACGGCTCGATTGTCTACCGTGGTCAAGAATTA
ACAGAACTAAAAACGAATAAGGAATGGGCTAAGATTCGTGGTTCAAAAATTGCTACTATTTTCCAAGATCCGATGACCAG
TCTTAGTCCTATCAAAACCATTGGTAGCCAGATTACAGAGGTCATTATCAAGCATCAAAAAGTTAGCCATTCTAAAGCCA
AAGAATTGGCGCTTGATTATATGAATAAAGTTGGTATTCCAAATGCGACAAAGCGTTTTGACGACTATCCATTTGAATAT
TCAGGTGGTATGCGCCAACGTATTGTTATTGCCATTGCGTTAGCTTGCCGCCCAGATATCCTGATTTGTGATGAGCCCAC
AACAGCTCTCGACGTTACAATACAAGCCCAAATTATTGAATTGTTGAAATCACTTCAAAAAGAGTACCATTTTACGATTA
TTTTTATCACTCATGATTTAGGTGTTGTGGCAAGTATTGCTGACAAGGTTGCTGTCATGTATGCTGGTGAAATTGTCGAG
TTTGGAACTGTTGAAGAAATTTTCTATGATCCACGTCATCCTTACACATGGAGTTTATTGTCAAGCTTACCGCAATTAGC
CAATGAGTCAGGAGAACTTTACTCAATTCCAGGGACACCACCGTCACTTTATTCGCCAATCGTTGGAGATGCGTTTGCGC
TTCGCTCAGAATATGCTATGGTTTTGGATTTCGAAGAGACACCACCTGCTATTAGTGTATCTGATACTCATTGGGCAAAA
ACATGGCTTTTGCACCCAGAGGCGCCAAAAGTTCAGAAACCGGCAGTTATTCAAGATTTACATCAAAAAATCTTGAAAAA
AATGTCACGATAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-299)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

78.797

99.714

0.786
  amiE Streptococcus thermophilus LMG 18311

77.65

99.714

0.774
  amiE Streptococcus thermophilus LMD-9

77.65

99.714

0.774
  oppD Streptococcus mutans UA159

57.27

96.286

0.551