Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   NC847_RS02365 Genome accession   NZ_CP098474
Coordinates   454846..455319 (+) Length   157 a.a.
NCBI ID   WP_263852591.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10239     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 449846..460319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC847_RS02340 (NC847_02325) dnaB 450276..451682 (+) 1407 WP_241532347.1 replicative DNA helicase -
  NC847_RS02345 (NC847_02330) pilH 451990..452655 (+) 666 WP_263055817.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NC847_RS02350 (NC847_02335) pilV/pilI 452684..453292 (+) 609 WP_263852580.1 type IV pilus modification protein PilV Regulator
  NC847_RS02355 (NC847_02340) pilJ 453289..454257 (+) 969 WP_260236889.1 PilW family protein Machinery gene
  NC847_RS02360 (NC847_02345) pilK 454236..454844 (+) 609 WP_215318018.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NC847_RS02365 (NC847_02350) pilL 454846..455319 (+) 474 WP_263852591.1 PilX family type IV pilin Machinery gene
  NC847_RS02370 (NC847_02355) - 455931..456376 (-) 446 Protein_461 AzlC family ABC transporter permease -
  NC847_RS02375 (NC847_02360) dut 456542..456994 (+) 453 WP_260236890.1 dUTP diphosphatase -
  NC847_RS02380 (NC847_02365) dapC 457072..458259 (+) 1188 WP_260236891.1 succinyldiaminopimelate transaminase -
  NC847_RS02385 (NC847_02370) yaaA 458570..459349 (+) 780 WP_260236892.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17509.31 Da        Isoelectric Point: 9.5685

>NTDB_id=599883 NC847_RS02365 WP_263852591.1 454846..455319(+) (pilL) [Neisseria gonorrhoeae strain 10239]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDDNDTLKSKLEIFVSDYKM
NPKIAKKYSVSVRFVNEGKPRAYRLVGVPNAGMGYTLSVWMNSVGDGYKCRDAASAKAYKEQLSGDGGCEALSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=599883 NC847_RS02365 WP_263852591.1 454846..455319(+) (pilL) [Neisseria gonorrhoeae strain 10239]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACGATAATGATACCCTCAAGAGCAAACTGGAAATATTTGTCTCAGACTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTGCGGTTTGTCAATGAGGGAAAACCAAGGGCATACAGGTTGGTCGG
TGTTCCGAACGCGGGGATGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCGGCAAAGGCCTATAAAGAGCAGTTGTCCGGAGACGGTGGTTGTGAAGCCTTATCCAACCGTAAGAAATAG

Domains

Predicted by InterProScan.

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

90.446

100

0.904
  pilX Neisseria meningitidis 8013

85.35

100

0.854